Exploring the helix-coil transition via all-atom equilibrium ensemble simulations.

By Eric J. Sorin, Vijay S. Pande. Biophysical Journal, 2005

632 citations recorded by the source corpus.

Subfields: Atomic and Molecular Physics, and Optics, Biomaterials, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/940877bc15ff98c5157db2b29c0679d5701eafe9

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Atomic and Molecular Physics, and Optics

1. David L. Mobley
2. Michael R. Shirts
3. Carlos Simmerling
4. Vijay S. Pande
5. John D. Chodera
6. Adrian E. Roitberg
7. Wim F. Vranken
8. A. W. Sousa da Silva

In Molecular Biology

1. David L. Mobley
2. Vijay S. Pande
3. Michael R. Shirts
4. John D. Chodera
5. Carlos Simmerling
6. Robert Abel
7. Adrian E. Roitberg
8. Viktor Hornak

Citations in the corpus

• ACPYPE - AnteChamber PYthon Parser interfacE (2012, background): “ffAMBER [20]), CNS/XPLOR, NAMD [21] and CHARMM) without breaking the compatibility of the force field.”
• Alchemical free energy methods for drug discovery: Progress and challenges (2011, background): “Rhee YM, Pande VS: Multiplexed-replica exchange molecular dynamics method for protein folding simulation.”
• Comparison of multiple Amber force fields and development of improved protein backbone parameters (2006, methodology): “This recently motivated us 12,18 and others 13,19 to revisit backbone dihedral parameterization for ff94/ff99.”