Bernard R. Brooks

Molecular Biology · 1983–2021

A researcher in the Science corpus: 13 papers; trusts 3 researchers and is trusted by 28 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 101 citations into it; #4,729 of 17,773 by trust here, #2,814 by citations
• Statistical and Nonlinear Physics — 16 citations into it

Whom Bernard R. Brooks trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Mark Newman
2. Martin Rosvall
3. Alexander D. MacKerell

Who trusts Bernard R. Brooks overall

1. Sunhwan Jo
2. Alexander D. MacKerell
3. A. Brunger
4. Dima Kozakov
5. Michael Feig
6. András Fiser
7. Dong Xu
8. Jay W. Ponder
9. Li Li
10. Rong Chen

Papers from Bernard R. Brooks's perspective

Ordered by how strongly the researchers Bernard R. Brooks trusts endorse each paper. Same corpus, a different order for every researcher.

1. Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters (International Conference on Software Composition)
2. The Protein Data Bank.
3. Emergence of Scaling in Random Networks
4. Power laws, Pareto distributions and Zipf's law
5. SIFTS: Structure Integration with Function, Taxonomy and Sequences resource
6. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
7. CATH: comprehensive structural and functional annotations for genome sequences
8. OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation (Journal of Chemical Theory and Computation)
9. Quantum statistics and classical mechanics: real time correlation functions from ring polymer molecular dynamics. (Journal of Chemical Physics)
10. Protein sectors: evolutionary units of three-dimensional structure

Their papers

• CHARMM: The biomolecular simulation program (2009) — 8,319 citations
• OpenMM 7: Rapid development of high performance algorithms for molecular dynamics (2016) — 2,485 citations
• CHARMM: The Energy Function and Its Parameterization (2002) — 405 citations
• Psi4 1.4: Open-source software for high-throughput quantum chemistry. (2020) — 902 citations
• Self-guided Langevin dynamics simulation method (2003) — 449 citations
• Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations (2006) — 249 citations
• Global organization of a binding site network gives insight into evolution and structure-function relationships of proteins (2017) — 7 citations
• Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package (2021) — 1,051 citations
• Advances in molecular quantum chemistry contained in the Q-Chem 4 program package (2014) — 2,677 citations
• A parallel implementation of the analytic nuclear gradient for time-dependent density functional theory within the Tamm–Dancoff approximation (2010) — 1,103 citations
• A super-linear minimization scheme for the nudged elastic band method (2003) — 179 citations
• New spherical‐cutoff methods for long‐range forces in macromolecular simulation (1994)
• CHARMM: A program for macromolecular energy, minimization, and dynamics calculations (1983)