Richard A. Friesner

Molecular Biology · 2002–2021

A researcher in the Science corpus: 24 papers; trusts 2 researchers and is trusted by 38 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 110 citations into it; #1,601 of 17,773 by trust here, #670 by citations
• Materials Chemistry — 58 citations into it; #2,953 of 11,513 by trust here, #3,446 by citations

Whom Richard A. Friesner trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Matthew P. Jacobson
2. Renxiao Wang
3. W. L. Jorgensen
4. Robert B. Murphy

Who trusts Richard A. Friesner overall

1. Elizabeth Yuriev
2. Veronica Salmaso
3. Zsolt Bikádi
4. Ben M. Webb
5. Luca Pinzi
6. Anastasiia V. Sadybekov
7. Stefano Moro
8. Elizabeth Dong Nguyen
9. Shengyou Huang
10. Paul A. Ramsland

Papers from Richard A. Friesner's perspective

Ordered by how strongly the researchers Richard A. Friesner trusts endorse each paper. Same corpus, a different order for every researcher.

1. Molecular recognition of the inhibitor AG-1343 by HIV-1 protease: conformationally flexible docking by evolutionary programming.
2. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.
3. Protein Structure Prediction and Structural Genomics
4. Novel procedure for modeling ligand/receptor induced fit effects.
5. Evaluation of docking performance: comparative data on docking algorithms. (Journal of Medicinal Chemistry)
6. Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction
7. LigScore: a novel scoring function for predicting binding affinities.
8. Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool.
9. Completeness in structural genomics (Nature Structural Biology)
10. Side‐chain modeling with an optimized scoring function

Their papers

• A hierarchical approach to all‐atom protein loop prediction (2004) — 2,320 citations
• Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening. (2004) — 6,073 citations
• Toward better refinement of comparative models: Predicting loops in inexact environments (2008) — 92 citations
• Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy. (2004) — 8,978 citations
• Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes. (2006) — 6,349 citations
• Motifs for molecular recognition exploiting hydrophobic enclosure in protein–ligand binding (2007) — 652 citations
• Novel procedure for modeling ligand/receptor induced fit effects. (2006) — 1,930 citations
• PHASE: a new engine for pharmacophore perception, 3D QSAR model development, and 3D database screening: 1. Methodology and preliminary results (2006) — 1,140 citations
• Advancing Drug Discovery through Enhanced Free Energy Calculations. (2017) — 304 citations
• Accurate and reliable prediction of relative ligand binding potency in prospective drug discovery by way of a modern free-energy calculation protocol and force field. (2015) — 1,186 citations
• On the role of the crystal environment in determining protein side-chain conformations. (2002) — 1,072 citations
• Role of the active-site solvent in the thermodynamics of factor Xa ligand binding. (2008) — 625 citations
• Replica Exchange with Solute Scaling: A more efficient version of Replica Exchange with Solute Tempering (REST2) (2011) — 685 citations
• OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins. (2016) — 2,754 citations
• Replica exchange with solute tempering: a method for sampling biological systems in explicit water. (2005) — 690 citations
• Importance of accurate charges in molecular docking: Quantum mechanical/molecular mechanical (QM/MM) approach (2005) — 404 citations
• Jaguar: A high-performance quantum chemistry software program with strengths in life and materials sciences (2013) — 1,644 citations
• OPLS3e: Extending Force Field Coverage for Drug-Like Small Molecules. (2019) — 1,023 citations
• Integrated Modeling Program, Applied Chemical Theory (IMPACT) (2005) — 1,390 citations
• OPLS4: Improving Force Field Accuracy on Challenging Regimes of Chemical Space. (2021) — 1,624 citations