Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models

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Protein 3D Structure Computed from Evolutionary Sequence Variation (2011, background): “, for the engineering of stable and fast-folding proteins [39], for the analysis of correlated network states in neural populations [40], regulatory gene network modeling from transcript profiles [41], to extract residue-residue interactions from nucleotide sequences [42–43]), as well as derivation ”
3D Protein Structure Predicted from Sequence (2011, unknown): “, for the engineering of stable and fast-‐folding proteins [37], for the analysis of correlated network states in neural populations [38], regulatory gene network modeling from transcript profiles [39], t”
A new ensemble coevolution system for detecting HIV-1 protein coevolution (2015, methodology): “Spidermonkey MCMC Bayesian network, phylogenetic tree 2008 [52]”