Paul A. Bates

Molecular Biology · 2001–2021

A researcher in the Science corpus: 10 papers; trusts 22 researchers and is trusted by 9 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 211 citations into it; #4,204 of 17,773 by trust here, #3,184 by citations
• Materials Chemistry — 90 citations into it; #4,577 of 11,513 by trust here, #5,047 by citations
• Computational Biology & Bioinformatics — 55 citations into it
• Computational Theory and Mathematics — 50 citations into it; #5,695 of 12,182 by trust here, #1,083 by citations
• Radiology, Nuclear Medicine and Imaging — 16 citations into it
• Artificial Intelligence — 14 citations into it
• Genetics — 14 citations into it
• Computational Chemistry & Drug Discovery — 10 citations into it

Whom Paul A. Bates trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. W. Kabsch
2. Joël Janin
3. Kim D. Pruitt
4. Bernard R. Brooks
5. Stephen F. Altschul
6. Gerard J. Kleywegt
7. Iain H. Moal
8. Rong Chen
9. Hang Li
10. D. Ritchie

Who trusts Paul A. Bates overall

1. Ben M. Webb
2. Andrej Sali
3. Narayanan Eswar
4. Sankar Basu
5. Marc A. Martí-Renom
6. Marc F. Lensink
7. Marc A Heim
8. Björn Wallner

Papers from Paul A. Bates's perspective

Ordered by how strongly the researchers Paul A. Bates trusts endorse each paper. Same corpus, a different order for every researcher.

1. A protein–protein docking benchmark (Proteins: Structure, Function, and Bioinformatics)
2. Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques.
3. Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing
4. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information.
5. TM-align: a protein structure alignment algorithm based on the TM-score
6. Docking and scoring protein complexes: CAPRI 3rd Edition
7. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
8. Principles of protein-protein interactions (European Conference on Computational Biology)
9. Computational design of proteins targeting the conserved stem region of influenza hemagglutinin
10. Small-molecule inhibitors of protein–protein interactions: progressing towards the dream

Their papers

• Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment (2016) — 130 citations
• Enhancement of protein modeling by human intervention in applying the automatic programs 3D‐JIGSAW and 3D‐PSSM (2001) — 593 citations
• The scoring of poses in protein-protein docking: current capabilities and future directions (2013) — 110 citations
• SwarmDock: a server for flexible protein-protein docking (2013) — 261 citations
• Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment (2019) — 104 citations
• Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment (2021) — 103 citations
• Updates to the integrated protein-protein interaction benchmarks: Docking benchmark version 5 and affinity benchmark version 2 (2015) — 424 citations
• Global topological features of cancer proteins in the human interactome (2006) — 519 citations
• Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing (2014) — 1,192 citations
• Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions (2013) — 102 citations