Thomas E. Cheatham III
Molecular Biology · 2000–2016
A researcher in the Science corpus: 8 papers; trusts 2 researchers and is trusted by 20 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 64 citations into it; #2,806 of 17,773 by trust here, #2,001 by citations
Whom Thomas E. Cheatham III trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Thomas E. Cheatham III overall
- Shota Uehara
- S. Khan
- Andrea Pasquadibisceglie
- Freddie R. Salsbury Jr.
- Diego del Alamo
- Nisha Muralidharan
- J. C. Robertson
- Jumin Lee
- Wenbo Yu
- Jacob D. Durrant
Papers from Thomas E. Cheatham III's perspective
Ordered by how strongly the researchers Thomas E. Cheatham III trusts endorse each paper. Same corpus, a different order for every researcher.
- A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules J. Am. Chem. Soc. 1995, 117, 5179−5197
- The Amber biomolecular simulation programs
- UCSF Chimera—A visualization system for exploratory research and analysis
- The Protein Data Bank.
- Numerical recipes in C
- Scalable Algorithms for Molecular Dynamics Simulations on Commodity Clusters (International Conference on Software Composition)
- Automatic atom type and bond type perception in molecular mechanical calculations. (Journal of Molecular Graphics and Modelling)
- Development and testing of a general amber force field
- Comparison of simple potential functions for simulating liquid water
- Force Field Validation Using Protein Side Chain Prediction
Their papers
- The Amber biomolecular simulation programs (2005) — 8,841 citations
- Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models. (2000) — 4,533 citations
- PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data. (2013) — 6,655 citations
- Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ Conformers (2007) — 1,997 citations
- Assessing the Current State of Amber Force Field Modifications for DNA (2016) — 466 citations
- Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles (2011) — 1,046 citations
- Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations (2008) — 3,218 citations
- Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms. (2007) — 801 citations