Pedro Alexandrino Fernandes

Molecular Biology · 2006–2013

A researcher in the Science corpus: 6 papers; trusts 12 researchers and is trusted by 26 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 133 citations into it; #2,079 of 17,773 by trust here, #6,216 by citations
• Computational Theory and Mathematics — 91 citations into it; #2,262 of 12,182 by trust here, #1,587 by citations
• Computational Chemistry & Drug Discovery — 71 citations into it; #110 of 425 by trust here, #205 by citations
• Materials Chemistry — 60 citations into it; #4,967 of 11,513 by trust here, #9,267 by citations
• Organic Chemistry — 16 citations into it; #144 of 1,495 by trust here, #599 by citations
• Radiology, Nuclear Medicine and Imaging — 16 citations into it; #2,236 of 3,265 by trust here, #1,970 by citations

Whom Pedro Alexandrino Fernandes trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Douglas B. Kitchen
2. Marcel L. Verdonk
3. Julie Bernauer
4. Holger Gohlke
5. Joël Janin

Who trusts Pedro Alexandrino Fernandes overall

1. András Szilágyi
2. Zsolt Bikádi
3. B. Gorelik
4. Andrea L. Jochim
5. Zhong-Ru Xie
6. L. Ferreira
7. Jacob D. Durrant
8. Garrett M. Morris
9. Maria Batool
10. Sjoerd Jacob de Vries

Papers from Pedro Alexandrino Fernandes's perspective

Ordered by how strongly the researchers Pedro Alexandrino Fernandes trusts endorse each paper. Same corpus, a different order for every researcher.

1. A new test set for validating predictions of protein–ligand interaction (Proteins: Structure, Function, and Bioinformatics)
2. Consensus scoring: A method for obtaining improved hit rates from docking databases of three-dimensional structures into proteins.
3. DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases
4. A computational procedure for determining energetically favorable binding sites on biologically important macromolecules.
5. A new concept for multidimensional selection of ligand conformations (MultiSelect) and multidimensional scoring (MultiScore) of protein-ligand binding affinities.
6. EUDOC: a computer program for identification of drug interaction sites in macromolecules and drug leads from chemical databases
7. Improved protein–ligand docking using GOLD
8. Diverse, high-quality test set for the validation of protein-ligand docking performance.
9. Structure-Based Strategies for Drug Design and Discovery
10. Computational drug design accommodating receptor flexibility: the relaxed complex scheme. (Journal of the American Chemical Society)

Their papers

• Protein–protein docking dealing with the unknown (2009) — 130 citations
• Protein–ligand docking: Current status and future challenges (2006) — 939 citations
• General performance of density functionals. (2007) — 956 citations
• Hot spots—A review of the protein–protein interface determinant amino‐acid residues (2007) — 733 citations
• Protein-ligand docking in the new millennium--a retrospective of 10 years in the field. (2013) — 236 citations
• Multidimensional epistasis and fitness landscapes in enzyme evolution. (2012) — 36 citations