Shane A. McCarthy
Molecular Biology · 2012–2023
A researcher in the Science corpus: 16 papers; trusts 3 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 225 citations into it
- Genetics — 191 citations into it
- Ecology — 22 citations into it
Whom Shane A. McCarthy trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Shane A. McCarthy overall
Papers from Shane A. McCarthy's perspective
Ordered by how strongly the researchers Shane A. McCarthy trusts endorse each paper. Same corpus, a different order for every researcher.
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- Supporting Online Material Materials and Methods Figs. S1 to S3 Tables S1 to S5 References Worldwide Human Relationships Inferred from Genome-wide Patterns of Variation
- Exome sequencing as a tool for Mendelian disease gene discovery
- A Draft Sequence of the Neandertal Genome (Science)
- Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. (American Journal of Human Genetics)
- The Ensembl Variant Effect Predictor
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data (Bioinform.)
- Inference of human population history from individual whole-genome sequences.
- A new statistical method for haplotype reconstruction from population data. (American Journal of Human Genetics)
- Fast and accurate long-range phasing in a UK Biobank cohort
Their papers
- A global reference for human genetic variation (2015) — 16,925 citations
- Towards complete and error-free genome assemblies of all vertebrate species (2020) — 2,673 citations
- Twelve years of SAMtools and BCFtools (2020) — 12,495 citations
- Identifying and removing haplotypic duplication in primary genome assemblies (2019) — 2,457 citations
- The UK10K project identifies rare variants in health and disease (2015) — 1,063 citations
- Insights into hominid evolution from the gorilla genome sequence (2012) — 719 citations
- BCFtools/csq: haplotype-aware variant consequences (2016) — 408 citations
- MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads (2023) — 1,714 citations
- YaHS: yet another Hi-C scaffolding tool (2022) — 2,061 citations
- Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study (2021) — 720 citations
- Insights into human genetic variation and population history from 929 diverse genomes (2019) — 860 citations
- Reference-based phasing using the Haplotype Reference Consortium panel (2016) — 1,643 citations
- Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel (2015) — 384 citations
- An integrated map of structural variation in 2,504 human genomes (2015) — 2,247 citations
- Health and population effects of rare gene knockouts in adult humans with related parents (2015) — 282 citations
- An integrated map of genetic variation from 1,092 human genomes (2012) — 8,008 citations