Feng Ding

Molecular Biology · with Dokholyan · 2006–2020

A researcher in the Science corpus: 10 papers; trusts 7 researchers and is trusted by 11 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 121 citations into it; #3,322 of 17,773 by trust here, #4,409 by citations
• Materials Chemistry — 50 citations into it; #1,956 of 11,513 by trust here, #7,558 by citations
• Computational Biology & Bioinformatics — 27 citations into it
• Spectroscopy — 8 citations into it
• Natural Language Processing — 5 citations into it

Whom Feng Ding trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Martin Karplus
2. J. Desjarlais
3. Steven Henikoff
4. Brian Kuhlman
5. Shuangye Yin
6. Roland L. Dunbrack
7. N. V. Dokholyan
8. S. Parasuraman
9. David Baker
10. Christopher Sander

Who trusts Feng Ding overall

1. N. V. Dokholyan
2. Andrew Leaver-Fay
3. Shuangye Yin
4. Jian Wang
5. Srinivas Ramachandran
6. S. J. Macalino
7. Elizabeth A. Proctor
8. Ron Jacak
9. Pradeep Kota
10. Vijayakumar Gosu

Papers from Feng Ding's perspective

Ordered by how strongly the researchers Feng Ding trusts endorse each paper. Same corpus, a different order for every researcher.

1. De novo protein design: fully automated sequence selection.
2. Protein data bank
3. Blind tests of RNA nearest-neighbor energy prediction
4. Position-based sequence weights.
5. Macromolecular modeling with rosetta.
6. Comparison of the predicted and observed secondary structure of T4 phage lysozyme.
7. Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules
8. De novo design of the hydrophobic cores of proteins
9. LGA: a method for finding 3D similarities in protein structures
10. Protein structure comparison by alignment of distance matrices.

Their papers

• Emergence of Protein Fold Families through Rational Design (2006) — 197 citations
• Eris: an automated estimator of protein stability (2007) — 404 citations
• RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. (2012) — 150 citations
• RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures (2015) — 197 citations
• RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers (2020) — 141 citations
• RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme (2017) — 197 citations
• Automated Minimization of Steric Clashes in Protein Structures (2011) — 649 citations
• Rapid flexible docking using a stochastic rotamer library of ligands (2010) — 97 citations
• Predicting binding affinity of CSAR ligands using both structure-based and ligand-based approaches (2013) — 22 citations
• Incorporating Backbone Flexibility in Medusadock Improves Ligand-binding Pose Prediction in the Csar2011 Docking Benchmark