Daniel R. O'Brien
Molecular Biology · 2014–2018
A researcher in the Science corpus: 7 papers; trusts 1 researcher and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 181 citations into it
Whom Daniel R. O'Brien trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Papers from Daniel R. O'Brien's perspective
Ordered by how strongly the researchers Daniel R. O'Brien trusts endorse each paper. Same corpus, a different order for every researcher.
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data (Bioinform.)
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
- Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments (Statistical Applications in Genetics and Molecular Biology)
- A comparison of methods for differential expression analysis of RNA-seq data (BMC Bioinformatics)
- HTSeq—a Python framework to work with high-throughput sequencing data (bioRxiv)
- baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data (BMC Bioinformatics)
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome (BMC Bioinformatics)
- Alternative Isoform Regulation in Human Tissue Transcriptomes (Nature)
- The UCSC genome browser and associated tools (Briefings Bioinform.)
- BLAT--the BLAST-like alignment tool. (Genome Research)
Their papers
- Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients (2018) — 792 citations
- Comprehensive Characterization of Cancer Driver Genes and Mutations (2018) — 2,007 citations
- Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma (2017) — 2,216 citations
- Pathogenic germline variants in 10,389 adult cancers (2018) — 734 citations
- The Immune Landscape of Cancer (2018) — 4,752 citations
- Oncogenic Signaling Pathways in The Cancer Genome Atlas (2018) — 2,663 citations
- MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing (2014) — 358 citations