Julio Collado-Vides
Molecular Biology · 2000–2018
A researcher in the Science corpus: 17 papers; trusts 5 researchers and is trusted by 7 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 128 citations into it; #7,025 of 17,773 by trust here, #1,966 by citations
- Genetics — 23 citations into it; #5,396 of 6,854 by trust here, #1,101 by citations
- Computational Theory and Mathematics — 15 citations into it
Whom Julio Collado-Vides trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Julio Collado-Vides overall
Papers from Julio Collado-Vides's perspective
Ordered by how strongly the researchers Julio Collado-Vides trusts endorse each paper. Same corpus, a different order for every researcher.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature
- A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information (Molecular Systems Biology)
- MetaCyc: a multiorganism database of metabolic pathways and enzymes (Nucleic Acids Res.)
- The Transporter Classification Database (TCDB): recent advances (Nucleic Acids Res.)
- EcoCyc: fusing model organism databases with systems biology (Nucleic Acids Res.)
- DNA binding sites: representation and discovery
- The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 (Nucleic Acids Res.)
- Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays (Proceedings of the National Academy of Sciences of the United States of America)
- Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection (Molecular Systems Biology)
Their papers
- EcoCyc: fusing model organism databases with systems biology (2012) — 614 citations
- The EcoCyc Database (2002) — 562 citations
- EcoCyc: A comprehensive view of Escherichia coli biology (2008) — 407 citations
- EcoCyc: a comprehensive database resource for Escherichia coli (2004) — 781 citations
- Minimum information requested in the annotation of biochemical models (MIRIAM) (2005) — 648 citations
- RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation (2007) — 529 citations
- RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) (2010) — 382 citations
- BioPAX – A community standard for pathway data sharing (2010) — 695 citations
- RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions (2005) — 387 citations
- EcoCyc: a comprehensive database of Escherichia coli biology (2010) — 523 citations
- Discovering regulatory elements in non-coding sequences by analysis of spaced dyads. (2000) — 355 citations
- Identifying global regulators in transcriptional regulatory networks in bacteria. (2003) — 541 citations
- The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 (2016) — 507 citations
- From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters (2009) — 631 citations
- RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more (2012) — 447 citations
- RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond (2015) — 473 citations
- RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 (2018) — 320 citations