Molecular systematics of armadillos (Xenarthra, Dasypodidae): contribution of maximum likelihood and Bayesian analyses of mitochondrial and nuclear genes.

By M. Balke, R. Beutel, A. Donath, L. Podsiadlowski, James M Pflug, Robert M. Waterhouse, Karen Meusemann, R. Peters, Hermes E. Escalona, Christoph Mayer and 9 more. Molecular Phylogenetics and Evolution, 2003

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Subfields: Genetics, Molecular Biology, Paleontology

View Paper: https://www.semanticscholar.org/paper/fd7fec2602b36c1e81078e092f3967d6ee5bb5a9

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Building the Coleoptera tree‐of‐life for >8000 species: composition of public DNA data and fit with Linnaean classification (2014, methodology): “…(1955), subsequently refined (Lawrence & Newton, 1982, 1995; Beutel & Leschen, 2005; Leschen et al., 2010), and has been broadly corroborated by phylogenetic analyses using morphology (Lawrence et al., 2011) and DNA sequences (e.g. Hunt et al., 2007; Maddison et al., 2009; McKenna & Farrell, 2009).”
Ribosomal DNA fingerprinting in the identification of non sporulating endophytes from Magnolia liliifera (Magnoliaceae) (2005, methodology): “…et al., 1994; Carrol, 1998; Saikkonen et al., 2004), occurrence (Gamboa and Bayman, 2001; Romero et al., 2001; Kumar et al., 2004; Suryanarayanan and Thennarasan, 2004), taxonomy (Petrini, 1986; Guo et al., 2000, 2001, 2003; Jeewon et al., 2004) and biotechnological application (Tomita, 2003).”
Juvenile corals can acquire more carbon from high-performance algal symbionts (2009, methodology): “Molecular techniques using nuclear 28S, ITS1, ITS2, and organellar 23S and cox1 markers have uncovered a large diversity describing eight major groupings or clades within the genus Symbiodinium (van Oppen et al. 2001; LaJeunesse 2002; Santos et al. 2002; Baker 2003; Pochon et al. 2004; Rowan 2004; T”
Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: Ostariophysi) (2011, methodology): “…a bootstrap support value at each branch (10 000 replicates) was calculated by resampling the estimated log likelihood value at each site (RELL method; Hasegawa & Kishino, 1994) and comparing the best tree to two rearranged trees at that branch with CONSEL (RELL local bootstrap probability; LBP).”
Impact of DNA sequence-data on the taxonomy of anamorphic fungi (2007, background): “Morphological species concepts, in many instances, have over-estimated or underestimated the speciation-events (Jeewon et al., 2004).”
Understanding Evolutionary Trees (2008, methodology): “Introductions to the technical aspects of phylogenetic analysis are provided by Hillis et al. (1996), Page and Holmes (1998), Nei and Kumar (2000), Felsenstein (2003), Salemi and Vandamme (2003), and Hall (2007).”
Comparing the impact of high CO2 on calcium carbonate structures in different marine organisms (2011, background): “1999; Beerling & Berner 2002) and increased dissolution may have had a leading role to play in the extinctions of marine invertebrates (Hautmann 2004).”
Inferring species phylogenies from multiple genes: concatenated sequence tree versus consensus gene tree. (2005, background): “Consequently , multiple gene and genome sequence datasets can now be used to reconstruct more robust evolutionary relationships (e.g., Delsuc et al., 2003; Hoofer et al., 2003; Teeling et al., 2003; Hedges et al., 2004; Wolf et al., 2004).”