High-throughput SNP genotyping with the GoldenGate assay in maize

By Jianbing Yan, Xiaohong Yang, T. Shah, Hector Sanchez-Villeda, Jiansheng Li, Marilyn Warburton, Yi Zhou, J. Crouch, Yunbi Xu. Molecular breeding, 2010

239 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/fb07dc65715b437122158f425b098a02fa82ff4d

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Citations in the corpus

Formation of Heterotic Groups and Understanding Genetic Effects in a Provitamin A Biofortified Maize Breeding Program (2014, methodology): “CIMMYT designed a golden gate assay of 1536 SNP chip in 2009, by selecting markers randomly throughout the genome (Yan et al., 2009), which distinguished well several subgroups within tropical maize germplasm without significant ascertainment bias.”
Genomics of Origin, Domestication and Evolution of Phaseolus vulgaris (2014, background): “genotyping of up to a million SNP markers (Yan et al. 2010).”
High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform (2011, background): “GoldenGate SNP chips have been successfully employed in barley, soybean, spruce, maize, wheat, and rice, demonstrating their utility for diversity and mapping studies across a wide range of plant genome sizes (Rostoks et al. 2006; Hyten et al. 2008; Pavy et al. 2008; Close et al. 2009; McMullen et a”
Molecular marker-assisted breeding options for maize improvement in Asia (2010, methodology): “…(Illumina GoldenGate array of 1,536 SNPs; Infinium array with up to 1 million SNPs; Flint-Garcia et al. 2005; Fan et al. 2006; Jones et al. 2009; Yan et al. 2009a) enable quick estimation of genetic structure in populations, and LD structure in genomes, which in turn, will greatly speed up the…”
Association Mapping for Enhancing Maize (Zea mays L.) Genetic Improvement (2011, methodology): “This density of genotyping can be achieved through array-based systems that can simultaneously genotype up to 1 million SNPs (Gupta et al., 2008; Yan et al., 2010a).”
Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement (2013, background): “Although Illumina Company claim an error rate of \0.025 % (http:// dnatech.genomecenter.ucdavis.edu/documents/WGA_ technote.pdf), the 2.4 % mean error rate observed in our data was comparable to *2 % reported by others (Yan et al. 2010b).”
Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize (2011, methodology): “For example, the action of two genes, lcyE and crtRB1, encoding the key enzyme of the carotenoid pathway, was confirmed using association analysis and the functional sequence polymorphisms were used to develop functional markers related to b-carotenoid content (Harjes et al. 2008; Yan et al. 2010a).”