New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations

By Michael S. Lee, Michael Feig, Freddie R. Salsbury, Charles L. Brooks III. Journal of Computational Chemistry, 2003

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MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology. (2004, methodology): “The all-atom energy function based on the CHARMM22 force field [56] includes implicit solvent contributions from the GBMV implementation of the generalized Born formalism[39,40].”
Conformation Dependence of Backbone Geometry in Proteins (2009, methodology): “, 1983) using the parm_all22_prot force field with the CMAP correction (Mackerell, 2004) using the GBMV implicit solvent model (Lee et al., 2003).”
SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules (2017, unknown): “Generalized-born (GB) parameters are computed through the GBMV2 method 68 and solvent-accessible surface area (SA) is the analytical approximation generated by CHARMM (version c36b1, 2011, https://www.charmm.org) 69 .”
Automatic selection of near-native protein-ligand conformations using a hierarchical clustering and volunteer computing (2010, methodology): “• Method 2: a more physically accurate implicit representation of water using a Generalized Born model [12, 8].”
Molecular dynamics simulations of protein dynamics and their relevance to drug discovery. (2010, methodology): “Both approximations have been under active development by attempting to best approximate solutions, at least numerically to the PossionBoltzmann equation [24,26,33-35].”