Vincent Zoete

Molecular Biology · 2007–2024

A researcher in the Science corpus: 15 papers; trusts 21 researchers and is trusted by 14 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 193 citations into it; #2,616 of 17,773 by trust here, #5,452 by citations
• Computational Theory and Mathematics — 143 citations into it; #2,326 of 12,182 by trust here, #836 by citations
• Materials Chemistry — 77 citations into it; #2,154 of 11,513 by trust here, #6,301 by citations
• Computational Chemistry & Drug Discovery — 70 citations into it; #234 of 425 by trust here, #371 by citations
• Spectroscopy — 48 citations into it; #994 of 1,674 by trust here, #1,109 by citations
• Computational Biology & Bioinformatics — 36 citations into it
• Pharmacology — 35 citations into it; #530 of 1,112 by trust here, #451 by citations
• Organic Chemistry — 27 citations into it

Whom Vincent Zoete trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Aurélien Grosdidier
2. David C. Jones
3. John J. Irwin
4. Olivier Michielin
5. Guoli Wang
6. W. L. Jorgensen
7. Holger Gohlke
8. Antoine Daina
9. Brian K. Shoichet
10. Roland L. Dunbrack

Who trusts Vincent Zoete overall

1. Antoine Daina
2. Olivier Michielin
3. Aurélien Grosdidier
4. Marine Bugnon
5. Leela S. Dodda
6. Katarzyna B. Koziara
7. Elizabeth Yuriev
8. Ute F. Röhrig
9. Shengyou Huang
10. Antonio Lavecchia

Papers from Vincent Zoete's perspective

Ordered by how strongly the researchers Vincent Zoete trusts endorse each paper. Same corpus, a different order for every researcher.

1. The Protein Data Bank.
2. The ChEMBL bioactivity database: an update
3. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
4. Highly accurate protein structure prediction with AlphaFold
5. The SWISS-MODEL Repository and associated resources
6. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.
7. Protein data bank
8. OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs (Nucleic Acids Res.)
9. SCOP: a structural classification of proteins database for the investigation of sequences and structures.
10. Predicting new molecular targets for known drugs

Their papers

• SwissTargetPrediction: a web server for target prediction of bioactive small molecules (2014) — 1,594 citations
• SwissParam: A fast force field generation tool for small organic molecules (2011) — 2,144 citations
• EADock: Docking of small molecules into protein active sites with a multiobjective evolutionary optimization (2007) — 207 citations
• SwissDock, a protein-small molecule docking web service based on EADock DSS (2011) — 1,756 citations
• Fast docking using the CHARMM force field with EADock DSS (2011) — 462 citations
• SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules (2019) — 3,840 citations
• SwissSimilarity: A Web Tool for Low to Ultra High Throughput Ligand-Based Virtual Screening (2016) — 330 citations
• Shaping the interaction landscape of bioactive molecules (2013) — 451 citations
• SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules (2017) — 7,392 citations
• SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina (2024) — 460 citations
• On-the-Fly QM/MM Docking with Attracting Cavities (2017) — 43 citations
• A BOILED‐Egg To Predict Gastrointestinal Absorption and Brain Penetration of Small Molecules (2016) — 2,142 citations
• The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases (2015) — 60 citations
• iLOGP: A Simple, Robust, and Efficient Description of n-Octanol/Water Partition Coefficient for Drug Design Using the GB/SA Approach (2014) — 853 citations
• Defining and searching for structural motifs using DeepView/Swiss-PdbViewer (2012) — 365 citations