Database resources of the National Center for Biotechnology Information
By E. Sayers, Evan E. Bolton, J. R. Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Ryan Connor, Kathryn Funk, Christopher Kelly, Sunghwan Kim and 15 more. Nucleic Acids Res., 2009
370 citations recorded by the source corpus.
In addition to maintaining the GenBank® nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site. NCBI resources include Entrez, the Entrez Programming Utilities, MyNCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link (BLink), Electronic PCR, OrfFinder, Spidey, Splign, Reference Sequence, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genomes and related tools, the Map Viewer, Model Maker, Evidence Viewer, Trace Archive, Sequence Read Archive, Retroviral Genotyping Tools, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Entrez Probe, GENSAT, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool, Biosystems, Peptidome, Protein Clusters and the PubChem suite of small molecule databases. Augmenting many of the web applications are custom implementations of the BLAST program optimized to search specialized data sets. All these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/f57bf5438ccf1c38b34c9ce83c2353b5312a76b9
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In Molecular Biology
- Sunghwan Kim
- Evan E. Bolton
- Stephen H. Bryant
- John S. Mattick
- Marcel E. Dinger
- Paulo P. Amaral
- David Moi
- Michael B. Clark
Citations in the corpus
- lncRNAdb: a reference database for long noncoding RNAs (2010, background): “These studies have indicated that lncRNAs comprise a class of bona fide gene products that have been largely unaccounted for in public databases such as RefSeq (16), UniGene (17) and the Mammalian Gene Collection (18).”
- Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes (2019, methodology): “enhanced phylogenies or tree profiles) for each HOG in OMA, we processed input data in OrthoXML format [62] with pyHam [24], using the NCBI taxonomic tree [63] pruned to contain only the genomes represented in OMA [16].”
- The Controversial Role of Human Gut Lachnospiraceae (2020, background): “Lachnospiraceae are currently described in the National Center for Biotechnology Information (NCBI) as comprising 58 genera and several unclassified strains [14].”
- PubChem3D: Shape compatibility filtering using molecular shape quadrupoles (2011, background): “Background PubChem is an open and free resource of the biological activities of small molecules [1-4].”