DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering

By Daniel Franke, Dmitri I. Svergun. Journal of Applied Crystallography, 2009

1,476 citations recorded by the source corpus.

DAMMIF, an enhanced and significantly faster implementation of the ab-initio shape-determination program DAMMIN for small-angle scattering data, is presented.

Subfields: Materials Chemistry, Radiation

View Paper: https://www.semanticscholar.org/paper/f22e2e243c19357c2397f2fffb7ff38bdf8daf12

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Alexey G. Kikhney
2. Richard E. Gillilan
3. Søren T Skou
4. Jesse Hopkins
5. Dmitri I. Svergun
6. Daniel Franke
7. P. Konarev
8. M. Petoukhov

In Radiation

1. Richard E. Gillilan
2. Søren T Skou
3. Jesse Hopkins
4. Alexey G. Kikhney
5. Daniel Franke
6. Dmitri I. Svergun
7. P. Konarev
8. M. Petoukhov

Citations in the corpus

• Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY) (2015, methodology): “The particle shape is then automatically reconstructed ab initio using DAMMIF (Franke & Svergun, 2009).”
• BioXTAS RAW: improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis (2017, methodology): “3), which provides a GUI interface for the DAMMIF, DAMAVER and DAMCLUST programs of the ATSAS package (Volkov & Svergun, 2003; Franke & Svergun, 2009; Petoukhov et al., 2012; Franke et al., 2017).”
• ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions (2017, methodology): “These include, but are not limited to, the following: (b) the Guinier Wizard to determine Rg with AUTORG/ DATRG; (c) the Distance Distribution Wizard, based on DATGNOM and GNOM, to determine the regularized scattering fit to the experimental data required for p(r) profile calculation and ab initio m”
• New developments in the ATSAS program package for small-angle scattering data analysis (2012, positive): “The DAMMIF interface enables multiple runs of the program followed by clusterization of the individual solutions by DAMCLUST.”
• How Random are Intrinsically Disordered Proteins? A Small Angle Scattering Perspective (2012, background): “DAILA_GA, for example, uses a genetic algorithm [67], whereas SAXS3D uses a Monte Carlo-type reconstruction algorithm [68], and the program suite DAMMIN/ DAMMIF/MONSA/GASBOR uses a simulated annealing procedure [69, 70].”