Genetic analyses from ancient DNA.

By Svante Pääbo, H. Poinar, D. Serre, V. Jaenicke-Després, Juliane Hebler, N. Rohland, M. Kuch, J. Krause, Linda Vigilant, M. Hofreiter. Annual Review of Genetics, 2004

1,259 citations recorded by the source corpus.

Subfields: Ecology, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/ee99c9476ec0319de49ef4efd93cfab7044098d1

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Citations in the corpus

From the field to the laboratory: Controlling DNA contamination in human ancient DNA research in the high-throughput sequencing era (2017, positive): “A dedicated aDNA laboratory should be isolated both physically and logistically from post-PCR facilities (Cooper and Poinar 2000; Poinar 2003; Knapp et al. 2012; Pääbo et al. 2004) and ﬁ tted with HEPA-ﬁ ltered ventilation (Knapp et al. 2012).”
A Draft Sequence of the Neandertal Genome (2010, positive): “A total of nine DNA extracts were prepared from the three bones (table S4) using procedures to minimize laboratory contamination that we have developed over the past two decades (22, 41).”
Conservation genetics in a globally changing environment: present problems, paradoxes and future challenges (2007, background): “…in Ne and changes in the genetic composition with time are the application of “so-called” ancient DNA techniques which utilize museum samples (Nielsen et al. 1997; Pertoldi et al. 2001, 2005, 2006a; Wisely et al. 2004; Garrigan and Hammer 2006 and for review see Paabo et al. 2004; Chelomina 2006).”
Characterization of primary biogenic aerosol particles in urban, rural, and high-alpine air by DNA sequence and restriction fragment analysis of ribosomal RNA genes (2007, background): “Under cool, dark, and dry conditions DNA can be preserved for several thousand years (Pääbo et al., 2004), but the DNA amount decreases and DNA information is lost.”
Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections (2018, methodology): “For example, Prosser et al. (2016) used a nested PCR approach and Ion Torrent™ Personal Genome Machine™ (Life Technologies) NGS to recover some full-length By D V, b ar le y ye llo w d w ar f v iru s; C yD V, c er ea l y el lo w d w ar f v iru s.”
Pteridosperms are the backbone of seed-plant phylogeny1 (2006, background): “In addition, the theoretical impossibility, and practical implausibility, of extracting DNA from fossils older than ca 100 ka (e.g., Pääbo et al. 2004) means that all major taxa of seedplants not represented in the extant flora are in practice impervious to DNA-based analyses.”
Ancient plant DNA in archaeobotany (2008, background): “Because of the possibility of pre-laboratory contamination, independent lab verification is useful only in certain cases, when novel or unexpected results are obtained, such as the first identification of Neanderthal sequences (Pääbo et al. 2004).”