A Modified Algorithm for the Improvement of Composite Interval Mapping

By Huihui Li, G. Ye, Jiankang Wang. Genetics, 2007

767 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/ee628eafa770118bff745fd2cf8578d53ff15d51

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In Genetics

1. Yunbi Xu
2. J. Crouch
3. L. Meng
4. Luyan Zhang
5. Huihui Li
6. Yan Sun
7. Jiankang Wang
8. Jinfa Zhang

In Plant Science

1. Yunbi Xu
2. J. Crouch
3. L. Meng
4. Luyan Zhang
5. Huihui Li
6. Yan Sun
7. Jiankang Wang
8. Jinfa Zhang

Citations in the corpus

• Quantitative trait loci for yellow pigment concentration and individual carotenoid compounds in durum wheat (2011, methodology): “The Inclusive Composite Interval Mapping (ICIM) method (Li et al., 2007) was employed for QTL mapping using QGene 4.”
• Relationships between grain protein content and grain yield components through quantitative trait locus analyses in a recombinant inbred line population derived from two elite durum wheat cultivars (2012, methodology): “The Inclusive Composite Interval Mapping (ICIM) method (Li et al. 2007) was employed for QTL mapping using QGene 4.”
• Linkage Map Construction and Quantitative Trait Locus Analysis of Agronomic and Fiber Quality Traits in Cotton (2014, methodology): “For BLUPs of each trait, we mapped additive QTL efects with inclusive composite interval mapping (ICIM) (Li et al., 2007), a variant of composite interval mapping (CIM), in QTL IciMapping v. 3.2 sotware (https://www. integratedbreeding.net, veriied 6 Dec. 2013). he ICIM method consists of two stages”
• QTL IciMapping: Integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations (2015, methodology): “lation studies have shown the great advantage of ICIM in improving QTL detection power [3,12], separating linked QTL [13], mapping interacting QTL [15,16], and assessing multiparental populations [20] and QTL-by-environment interaction [18].”
• Conserved salt tolerance quantitative trait locus (QTL) in wild and cultivated soybeans (2008, background): “This was not surprising since wild soybean is the progenitor of cultivated soybean and, as suggested by Liu et al. (2007), some useful genes from wild soybean have been repeatedly introduced into cultivated soybean and have been retained in a variety of cultivated soybean landraces.”
• Genetic mapping of quantitative trait loci in crops (2017, methodology): “Multiple intervalmapping (MIM), an extension of interval mapping to multiple QTL, tends to bemore powerful and precise than CIM in identifying QTL and allows the simultaneous estimation of multiple QTL with epistasis [42].”
• QTL mapping of yield-related traits in the wheat germplasm 3228 (2010, methodology): “:3 population is a temporary mapping population and already widely used in other crops (Ribaut et al. 1997; Börner et al. 2000; Marsan et al. 2001; He et al. 2005; Li et al. 2007a, b, c).”
• Inclusive composite interval mapping of quantitative trait genes. (2009, unknown): “式中, y是数量性状的观测值, ε是随机误差。 对于只包含 2 种基因型的作图群体, 如回交、 重组近交家系、加倍单倍体等, 只包含加性效应(加 性效应的含义因群体而异([20-21,23])), 这时多QTL遗传 模型和完备线性模型分别为:”
• Efficiency of selective genotyping for genetic analysis of complex traits and potential applications in crop improvement (2010, methodology): “Marker interval-based power analysis (Li et al. 2007) confirms the property of LOD profile of each method.”