An introduction to Dynamic Energy Budget (DEB) models with special emphasis on parameter estimation

By Jaap van der Meer. 2006

259 citations recorded by the source corpus.

Subfields: Ecology, Ecology, Evolution, Behavior and Systematics, Nature and Landscape Conservation

View Paper: https://www.semanticscholar.org/paper/eb94ab1c14baeca1fed76378e1a9982eb4110a76

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In Ecology

In Ecology, Evolution, Behavior and Systematics

In Nature and Landscape Conservation

Citations in the corpus

Use of dynamic energy budget and individual based models to simulate the dynamics of cultivated oyster populations (2006, methodology): “(2006), Van der Meer (2006) and Van der Veer et al. (2006). They are based on Kooijman (2000) DEB theory and have already been applied by Van Haren and Kooijman (1993) to Mytilus edulis, Van der Veer et al. (2001) to flatfishes and Cardoso et al.”
Local effects of blue mussels around turbine foundations in an ecosystem model of Nysted off-shore wind farm, Denmark (2009, methodology): “We applied a DEBmodel (Kooijman, 2000; van der Meer, 2006) for estimation of blue mussel growth in response to the environment in terms of temperature and food concentration. We used the parameterisation for M. edulis in van der Veer et al. (2006) except the half saturation constant of ingestion tha”
Bio‐energetics underpins the spatial response of North Sea plaice (Pleuronectes platessa L.) and sole (Solea solea L.) to climate change (2012, background): “=3 pM½ exp TATref TA T V jf Em½ þ EG½ ð6Þ The DEB models for plaice and sole (Van Der Veer et al., 2009; Freitas et al., 2011) have been validated in accordance with most up to date estimation methods (Lika et al., 2011a,b).”
Modelling climate change impacts on marine fish populations: process-based integration of ocean warming, acidification and other environmental drivers (2016, background): “In 573 Dynamic Energy Budget (DEB) models (Kooijman, 2000, van der Meer, 2006), individuals 574 are characterized by the state of different energy compartments such as structure, reserves 575 and reproduction (Lika and Kooijman, 2011, Nisbet et al., 2012).”
A comparison of scope for growth (SFG) and dynamic energy budget (DEB) models applied to the blue mussel (Mytilus edulis) (2011, background): “DEB theory describes the individual in terms of two state variables, structural body and reserves (van der Meer, 2006), describing energy flow through organisms from assimilation to allocation to growth, reproduction and maintenance.”
The estimation of DEB parameters for various Northeast Atlantic bivalve species (2006, background): “However, estimation of these parameters is complicated and can often not be done in a direct way (Van der Meer, 2006-this issue).”
Application of a dynamic energy budget model to the Pacific oyster, Crassostrea gigas, reared under various environmental conditions (2006, methodology): “Even the estimation procedure itself is a source of uncertainty: for example, Van der Meer (2006this issue) illustrated clearly that simultaneous regressions on combined sets of data on the blue mussel, Mytilus edulis (i.e. weighted non-linear least squares regression) gave more reliable estimates t”
Applying Dynamic Energy Budget (DEB) theory to simulate growth and bio-energetics of blue mussels under low seston conditions (2009, methodology): “The mathematical equations are similar to those presented in Pouvreau et al. (2006) and Van der Meer (2006), while most of the parameter values are from Van der Veer et al. (2006) and Mazurié et al. (in prep.).”
Modeling fish growth and reproduction in the context of the Dynamic Energy Budget theory to predict environmental impact on anchovy spawning duration (2009, background): “…study.81 2 Model structure82 2.1 Standard DEB model83 The standard model of the DEB theory (Kooijman, 2000, 2001; Nisbet et al.,84 2000; van der Meer, 2006) describes the rate at which the organism assimilates85 and utilizes energy for maintenance, growth and reproduction as a function of86…”