Use of dynamic energy budget and individual based models to simulate the dynamics of cultivated oyster populations

By Cédric Bacher, Aline Gangnery. 2006

98 citations recorded by the source corpus.

Subfields: Ecology, Global and Planetary Change, Oceanography

View Paper: https://www.semanticscholar.org/paper/b246917afbf2d1b958bbc507b24f502a4da4e40a

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In Ecology

In Global and Planetary Change

In Oceanography

Citations in the corpus

Global change and climate‐driven invasion of the Pacific oyster (Crassostrea gigas) along European coasts: a bioenergetics modelling approach (2016, background): “Therefore, following Bacher & Gangnery (2006), inter-individual variability in growth potential was assumed to be related to the half-saturation coefficient of the functional response, XK (equations 2 0 and 2″, Table S1).”
A comparison of scope for growth (SFG) and dynamic energy budget (DEB) models applied to the blue mussel (Mytilus edulis) (2011, methodology): “For example, Bacher and Gangnery (2006) used the Nelder–Mead method implemented in Matlab® to calibrate two parameters of DEB to simulate the growth of Crassostrea gigas.”
Application of a dynamic energy budget model to the Pacific oyster, Crassostrea gigas, reared under various environmental conditions (2006, methodology): “Furthermore, the sensitivity analyses performed by Bacher and Gangnery (2006) on the present model showed that parameter κ also had a significant effect on the growth simulation.”
Applying Dynamic Energy Budget (DEB) theory to simulate growth and bio-energetics of blue mussels under low seston conditions (2009, methodology): “The model is designed for simu b originally developed for oysters (Pouvreau et al., 2006 ; Bacher and Gangnery, 2006), but was later modified to model mussels by adapting it to parameters presented in Van der Veer et al. (2006) and Mazurié et al. (in prep.).”
Modelling growth and reproduction of the Pacific oyster Crassostrea gigas: advances in the oyster-DEB model through application to a coastal pond. (2009, unknown): “(2006) and Bacher and Gangnery (2006) who each used independent 16 datasets.”
Energy homeostasis as an integrative tool for assessing limits of environmental stress tolerance in aquatic invertebrates. (2012, background): “However, they require extensive parameterization that is time- and effort-consuming and feasible only for a few well-studied species (Van Haren and Kooijman, 1993; van Haren et al., 1994; Bacher and Gangnery, 2006; Kooijman et al., 2009; Sarà et al., 2012).”
Modelling trace metal (Hg and Pb) bioaccumulation in the Mediterranean mussel, Mytilus galloprovincialis , applied to environmental monitoring (2006, result): “…very different from our value (0.25), showing that our results were consistent – it must also be noted that the differences we found are much lower than differences between species (e.g. 0.165 for Crassostrea (Bacher and Gangnery, 2006-this issue) or 0.365 for Macoma (Van der Veer et al., 2006).”
Local effects of blue mussels around turbine foundations in an ecosystem model of Nysted off-shore wind farm, Denmark (2009, unknown): “Several studies used DEB models for estimation of production carrying capacity of shellfish using measured food concentrations and temperature as input (Bacher and Gangnery, 2006; Pouvreau et al., 2006), while important feed-backs to the ecosystemwere not considered (McKindsey et al.”
A dynamic energy budget model: parameterisation and application to the Pacific oyster Crassostrea gigas in New Zealand waters (2008, methodology): “The former type of models have been widely used over a couple of decades (Raillard et al.,1993; Barille et al.,1997; Kobayashi et al.,1997; Gangnery et al., 2003), while the latter has been increasingly popular recently ( Bacher and Gangnery, 2006; Pouvreau et al., 2006).”
Representing the acquisition and use of energy by individuals in agent‐based models of animal populations (2013, methodology): “DEB has been applied within an ABM to earthworms (Baveco & DeRoos 1996) and oysters (Bacher & Gangnery 2006).”