GenePattern 2.0

By Michael Reich, T. Liefeld, Joshua Gould, Jim Lerner, Pablo Tamayo, Jill P. Mesirov. Nature Genetics, 2006

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CuMiDa: An Extensively Curated Microarray Database for Benchmarking and Testing of Machine Learning Approaches in Cancer Research (2019, methodology): “Since then, the use of microarray data in ML and Bioinformatics became commonplace.”
Efficient and rapid generation of induced pluripotent stem cells from human keratinocytes (2008, methodology): “44 were considered to be not expressed and marked as 0 and then clustered using a Pearson correlation as a distance measure and using pairwise complete linkage, as implemented in GenePatter”
BIOINFORMATICS ORIGINAL PAPER (neutral): “Web-based user interfaces, such as the ), GenePattern (Reich et al. , 2006), MOWServ (Navas-Delgado al.”