Genome-wide in situ exon capture for selective resequencing

By E. Hodges, Zhenyu Xuan, Vivekanand S. Balija, M. Kramer, Michael Molla, Steven Smith, C. Middle, M. Rodesch, Thomas Albert, Gregory J. Hannon and 1 more. Nature Genetics, 2007

732 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/e14690abab5cf4f492d6b96f5327ddced9068212

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Citations in the corpus

A Groupwise Association Test for Rare Mutations Using a Weighted Sum Statistic (2009, background): “New technologies allow sequencing of parts of the genome of large groups of individuals [1], and hereby initiate the next generation of large scale association studies.”
Status and Prospects of Association Mapping in Plants (2008, methodology): “h e second approach combines array-based hybridization enrichment and ultra-highthroughput sequencing (Albert et al., 2007; Hodges et al., 2007; Okou et al., 2007; Porreca et al., 2007).”
The Next-Generation Sequencing Revolution and Its Impact on Genomics (2013, unknown): “The second approach involves hybrid capture, which has been developed by several groups and commercialized (Albert et al., 2007; Gnirke et al., 2009; Hodges et al., 2007).”
TP53 Variations in Human Cancers: New Lessons from the IARC TP53 Database and Genomics Data (2016, methodology): “Affymetrix U133Plus2 mRNA expression, Affymetrix SNP 6.0 data, exome sequencing data [Hodges et al., 2007], and OncoMap data [MacConaill et al. 2009] have been obtained from the CCLE Website (http://www.broadinstitute.org/ ccle/home).”
A survey of tools for variant analysis of next-generation genome sequencing data (2013, unknown): “quences [2, 3].”
Learning about human population history from ancient and modern genomes (2011, methodology): “This approach has been used successfully to capture and sequence complete exomes or complete mtDNA genomes from a large number of individuals in a parallel manne”
A large genome centre’s improvements to the Illumina sequencing system (2008, background): “Also, because the size distribution of DNA fragmented by AFA is narrow, for some applications, such as array enrichment of targeted loc”
BSMAP: whole genome bisulfite sequence MAPping program (2009, unknown): “Recently, front-end array capture [8] coupled with bisulfite sequencing has become a popular cost-effective strategy to generate methylation profiling of a reduced representation of a large genome, e.”
Sequencing technologies — the next generation (2010, unknown): “oligonucleotide microarrays have been designed to provide complementary sequences for solid-phase hybridization to enrich for exon”
Applications of next-generation sequencing to phylogeography and phylogenetics. (2013, methodology): “1c), fragmented gDNA is mixed with DNA or RNA probes, which hybridize to gDNA fragments either on an array (Albert et al., 2007; Hodges et al., 2007; Okou et al., 2007) or in solution (Gnirke et al.”
Lessons from the cancer genome. (2013, unknown): “In parallel, methods were developed that employ hybridization to oligonucleotide ‘‘baits’’ in aqueous solution to capture specific portions of the genome— most importantly, the 2%of genomic DNA that contains known exons (the ‘‘exome’’) (Gnirke et al., 2009; Hodges et al., 2007).”
Genomics and the future of conservation genetics (2010, methodology): “As the cost of sequencing continues to fall, reduced-representation sequencing may replace SNP chips as a preferred method in many case”
Towards next‐generation biodiversity assessment using DNA metabarcoding (2012, methodology): “1; see e.g. Hodges et al. 2007; Briggs et al. 2009; Hodges et al. 2009; Avila-Arcos et al. 2011) using oligonucleotides (=capture probes) that target conserved regions.”