MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

By Sudhir Kumar, Glen Stecher, Michael Li, Christina Knyaz, Koichiro Tamura. Molecular biology and evolution, 2018

32,860 citations recorded by the source corpus.

Subfields: Artificial Intelligence, Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/df3dd2979920efe6d348edaf0795973ea342d3d8

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Artificial Intelligence

1. Heng Li
2. Steven L. Salzberg
3. Richard Durbin
4. Fritz J. Sedlazeck
5. Michael C. Schatz
6. Sergey Koren
7. Adam M. Phillippy
8. Benedict Paten

In Genetics

1. Glen Stecher
2. Koichiro Tamura
3. Sudhir Kumar
4. Heng Li
5. Steven L. Salzberg
6. Michael C. Schatz
7. Olivier Gascuel
8. Richard Durbin

In Molecular Biology

1. Heng Li
2. Steven L. Salzberg
3. Sergey Koren
4. Adam M. Phillippy
5. Michael C. Schatz
6. Koichiro Tamura
7. Sudhir Kumar
8. Glen Stecher

Citations in the corpus

• Molecular Evolutionary Genetics Analysis (MEGA) for macOS. (2020, methodology): “With the porting of MEGA to the macOS operating system, MEGA GUI now runs natively on Windows, Linux, and macOS and provides a consistent user-experience across platforms.”
• The COVID-19 Pandemic: A Comprehensive Review of Taxonomy, Genetics, Epidemiology, Diagnosis, Treatment, and Control (2020, methodology): “The tree was visualized in MEGA X [57] (Figure 2).”
• Using PhyloSuite for molecular phylogeny and tree‐based analyses (2023, methodology): “The algorithm of codon alignment implemented in PhyloSuite is similar to the one in MEGA [21] and TranslatorX [22].”
• Phylogeny and taxonomy of Synechococcus-like cyanobacteria (2020, methodology): “2.10 with rapid bootstrapping and with NJ under JTT model and 500 bootstrap (BP) repetitions (due to exceptional time requirements for analysis of such a long alignment) in MEGA 10.0.4 (Kumar et al. 2018).”
• Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan (2020, methodology): “Evolutionary analyses were conducted in MEGA X [15].”
• NGPhylogeny.fr: new generation phylogenetic services for non-specialists (2019, background): “In the same spirit, SeaView (9) and MEGA (10) offer integrative solutions for phylogenetic analysis, while providing a standalone software to be installed locally.”
• Monkeypox Virus in Nigeria: Infection Biology, Epidemiology, and Evolution (2020, methodology): “A phylogenetic tree was constructed from the aligned sequences, using a Maximum Likelihood (ML) algorithm as implemented in MEGA X software [175].”
• The complete sequence of a human genome (2021, methodology): “For CHM13 paralogs, sequences were aligned using MAFFT v7 (118) and analyzed using MEGA X (119).”
• Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia (2020, methodology): “Phylogenetic analyses of these sequences were performed using the neighbor joining method in MEGA X (14).”
• Uncanny similarity of unique inserts in the 2019-nCoV spike protein to HIV-1 gp120 and Gag (2020, methodology): “Out of 55 coronavirus genome 32 representative genomes of all category were used for phylogenetic tree development using MEGAX software (Kumar et al., 2018).”