Population structure and long-range linkage disequilibrium in a durum wheat elite collection

By M. Maccaferri, M. C. Sanguineti, E. Noli, Roberto Tuberosa. Molecular breeding, 2005

248 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/18b4defd94f093d654952f61a0d4fc585a3843f3

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Citations in the corpus

Association mapping of leaf rust response in durum wheat (2009, background): “Furthermore, a clearly distinct and highly homogeneous pattern common to a relatively high number (35 in total) of accessions which are also interrelated by pedigree (Maccaferri et al. 2005) is evident in the central to lower part of the cluster (accessions from Pietrafitta to Ciccio; part B of Fig.”
Evaluation of Genetic Diversity and Genome‐wide Linkage Disequilibrium among U.S. Wheat (Triticum aestivum L.) Germplasm Representing Different Market Classes (2007, background): “The identifi cation of substructure among wheat accessions has been used in analyses to reduce the number of spurious associations found in independent loci pairs (Maccaferri et al., 2005; Breseghello and Sorrells, 2006).”
Linkage disequilibrium and association studies in higher plants: Present status and future prospects (2005, background): “Maccaferri et al. (2004) LD among SSRs and its relation with ecogeographical distribution.”
Applications of Linkage Disequilibrium and Association Mapping in Maize (2009, background): “mays) (Remington et al. 2001b; Ching et al. 2002; Tenaillon et al. 2002; Palaisa et al. 2003), barley (Hordeum vulgare) (Caldwell et al. 2004, 2006), Arabidopsis thaliana (Nordborg et al. 2002, 2005), sorghum (Sorghum bicolor) (Hamblin et al. 2005) and durum wheat (Triticum durum) ( Maccaferri et al”
Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives (2008, methodology): “Similar levels of long range LD, extending over several cM, have been reported for self-pollinating species such as Arabidopsis when considering isolated populations (Nordborg et al. 2002), barley (Russell et al. 2003), soybean (Hyten et al. 2007) and wheat (Maccaferri et al. 2005).”
Genetic diversity, structure and fruit trait associations in Greek sweet cherry cultivars using microsatellite based (SSR/ISSR) and morpho-physiological markers (2011, background): “…markers could then be used in studies with a variety of other organisms, such as cereal species (rice: Virk et al. 1996; barley: Pakniyat et al. 1997; wheat: Breseghello and Sorrells 2006; Maccaferri et al. 2005), as well as tree crops such as mulberry (Kar et al. 2008; Vijayan et al. 2006).”
Association mapping of yield and its components in rice cultivars (2007, methodology): “…markers, for example SSRs, have been used to characterize population structure in maize (Flint-Garcia et al. 2005; Remington et al. 2001) and rice (Garris et al. 2003); and LD-based associations in wheat, (Kruger et al. 2004), barley (Maccaferri et al. 2005), and Lolium (Skøt et al. 2005).”
Genetic diversity, linkage disequilibrium, and association mapping analyses of peach (Prunus persica) landraces in China (2012, background): “Nonetheless, this LD value is smaller than that of cotton (Abdurakhmonov et al. 2008) and durum wheat (Maccaferri et al. 2005), which had LD values approximately 10 cM and larger than 30–40 cM at r 2 00.1.”
Genomic Selection for Crop Improvement (2017, unknown): “…kb in a diversity panel of rice (Oryza sativa; Mather et al., 2007), 10 to 20 cM (roughly 50–100 Mb) in elite cultivars of wheat (Triticum aestivum; Chao, 2007; Maccaferri et al., 2005), 0.1 to 1.5 kb in diverse inbred lines of maize (Zea mays ssp. mays; Remington et al., 2001; Tenaillon Figure 1.”
Linkage disequilibrium, genetic association mapping and gene localization in crop plants (2008, background): “For instance, in a study in maize, as many as 501 genes were screened using 75 EST-SSRs, to obtain signatures of selection.”
Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.) (2010, background): “According to Maccaferri et al. (2005), four classes of marker pairs were defined: class 1—tight linkage (distance \ 10 cM); class 2—moderate linkage (10–20 cM); class 3—loosely linked (20–50 cM); and class 4—independent pairs ([50 cM).”
Association analysis using SSR markers to find QTL for seed protein content in soybean (2008, background): “Table 3 shows the evaluation of intrachromosomal LD for the four classes subdivided by genetic distance between loci pairs, i.e., tightly linked ( 20 cM), considering that LD was significant at P Maccaferri et al. 2005 ).”
An integrated DArT-SSR linkage map of durum wheat (2008, unknown): “Lloyd, cv. released by North Dakota State University, is a semi-dwarf, photoperiod-sensitive durum wheat and has a genetic profile consistent with those of the North American durums (Maccaferri et al. 2005, 2007; Mantovani et al. 2006).”
Genetic Diversity, Population Structure, and Linkage Disequilibrium in U.S. Elite Winter Wheat (2010, background): “9 alleles per locus (Plaschke et al., 1995; Dreisigacker et al., 2004; Breseghello and Sorrells, 2006; Maccaferri et al., 2005) among varied sources of wheat collections.”