Nascent transcript sequencing visualizes transcription at nucleotide resolution

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Precise genome-wide mapping of single nucleosomes and linkers in vivo (2018, methodology): “Other data sets used in this study were downloaded using the following GEO accession numbers: GSE25107, NET-seq data [73]; GSE74787, Rpb3 ChIPseq data [79]; GSE47073, H2A.”
CRISPR interference (CRISPRi) for sequence-specific control of gene expression (2013, methodology): “Otherwise, quantitative methods such as qRT-PCR or genome-wide NET-seq could be used to measure the effects on transcription 44,45 .”
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. (2013, methodology): “Nascent RNA was purified from the eluate using the miRNeasy kit (QIAGEN) and was converted to DNA using a previously established library generation protocol (Churchman and Weissman, 2011).”
FIDDLE: An integrative deep learning framework for functional genomic data inference (2016, background): “We first demonstrate that these individual data types contain information about TSS-seq by quantifying the prediction of conditional probability distribution and peak detection accuracy.”