propy: a tool to generate various modes of Chou's PseAAC

By Dongsheng Cao, Qingsong Xu, Yizeng Liang. Bioinform., 2013

460 citations recorded by the source corpus.

Subfields: Molecular Biology, Spectroscopy

View Paper: https://www.semanticscholar.org/paper/db416b8d96aa2077e0ca10f9ada95245631c3642

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Kuo-Chen Chou
2. Xuan Xiao
3. Jianhua Jia
4. Zi Liu
5. Bingxiang Liu
6. Hao Lin
7. Dongsheng Cao
8. Wei Chen

In Spectroscopy

1. Kuo-Chen Chou
2. Cao Xiao
3. Jimeng Sun
4. Dongsheng Cao

Citations in the corpus

• pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach. (2016, methodology): “Ever since the concept of pseudo amino acid composition or Chou’s PseAAC [37-39] was proposed, it has rapidly penetrated into many biomedicine and drug development areas [40] and nearly all the computational proteomics areas (see, e.g., [41-44; 45 ; 46-50] as well as a long list of references cited ”
• BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions (2016, methodology): “Several bioinformatics packages for computing structural and physicochemical features of proteins or DNAs/ RNAs have been previously developed, including PRO-FEAT [41], BioJava [42], PseAAC, propy [43], repDNA [44], repRNA [45], protr [46] etc.”
• Impacts of bioinformatics to medicinal chemistry. (2015, methodology): “Because the approach of using PseAAC to represent protein/peptide sequences has been widely and increasingly used, in addition to the web-server “PseAAC” [114] built in 2008, recently three powerful open access soft-wares, called “PseAAC-Builder” [115], “propy” [116], and “PseAACGeneral” [117], were”
• MolTrans: Molecular Interaction Transformer for drug–target interaction prediction (2020, methodology): “-FCS: we replace FCS embedding with ECFP4 fingerprint for drug and PSC descriptor for protein.”
• PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition. (2014, methodology): “Owing to its wide and increasing applications, recently three powerful software programs—PseAAC–Builder [21], propy [22], and PseAAC–General [23]—were established for generating various different modes of PseAAC in addition to the web server PseAAC [24] built in 2008.”