PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition.

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Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences (2015, background): “Because this kind of approaches have been widely and increasingly used in many areas of computational biology, a number of web servers and stand-alone programs were developed for generating varieties of pseudo components for DNA sequences (9,10), RNA sequences (8) and protein sequences (4,11–13).”
Circular RNA-protein interactions: functions, mechanisms, and identification (2020, background): “The cornerstone of the theory is K-tuple nucleotide composition, which is primarily based on the proportion of A (adenine), G (guanine), C (cytosine), and U (uracil) bases [86, 87].”
Impacts of bioinformatics to medicinal chemistry. (2015, methodology): “Meanwhile, there are three public accessible servers to generate PseKNC for DNA/RNA sequences: (1) PseKNC [121], (2) PseKNC-General [127], and (3) repDNA [128].”
pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach. (2016, methodology): “Inspired by the successes of using PseAAC to deal with protein/peptide sequences, three web-servers [53-55] were consecutively developed for generating various pseudo components for DNA/RNA sequences as well.”