Examining the global distribution of dominant archaeal populations in soil

By S. Bates, Donna berg-Lyons, J. Gregory Caporaso, William Walters, Rob Knight, Noah Fierer. The ISME Journal, 2011

1,207 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/da0555222b0bac0d3d3e98ffad4cdc4038d129c1

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecology

In Molecular Biology

Citations in the corpus

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes (2012, methodology): “A portion of the 16S rRNA gene was ampliﬁed in triplicate PCR reactions using the F515 and R805 primers designed to be universal for bacterial and archaeal taxa (Bates et al. , 2011; Bergmann et al. , 2011).”
Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide. (2015, background): “The contribution of N corrobo-rates previous observations that soil archaeal communities are structured across diverse ecosystems by N availability (Bates et al. 2010), likely reﬂecting the important role of soil archaea in N-cycling (Leininger et al. 2006).”
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers (2011, background): “Received on December 8, 2010; revised and accepted on February”
Linking microbial communities, functional genes and nitrogen-cycling processes in forest floors under four tree species (2016, neutral): “Bates et al. (2011) found soil C:N ratio to be 395 the best predictor for archaeal relative abundances, with higher C:N ratios leading to higher 396 archaeal relative abundances.”
Using network analysis to explore co-occurrence patterns in soil microbial communities (2011, methodology): “In brief, a region of the 16S rRNA gene (B250 nucleotides) was amplified with the primers F515 (50-GTGCCAGCMGCCGCGG TAA-30) and R806 (50-GGACTACVSGGGTATCT AAT-30) that should amplify nearly all bacteria and archaea with few biases against particular groups (Bates et al., 2010).”
Soil protistology rebooted: 30 fundamental questions to start with (2017, neutral): “The under-studied nature of soil protists is exemplified by a comparison between research on protists and on soil archaea, a domain erected in 1990 and reported to be functionally important in soil only decade ago (Leininger et al., 2006; Bates et al., 2011).”
The global soil community and its influence on biogeochemistry (2019, background): “Similar levels of hyperdominance have been detected in broad-scale communities of mycorrhizal fungi (64), archaea (65), and invertebrates (66).”
The biomass distribution on Earth (2018, methodology): “For our 16S rDNA sequencing-based estimate, we rely on a study which reported values for the fraction of archaea out of the total population of soil bacteria and archaea in 146 soils from across the globe (58).”
Soil pH and biome are both key determinants of soil archaeal community structure (2015, background): “This is consistent with the findings of an archaeal 16S rRNA genebased survey of Bates et al. (2011), where they showed that only two phylotypes (at 97% sequence identity) belonging to the group 1.”
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil (2011, neutral): “However, no study had conclusively demonstrated ammonia oxidation performed by members of this group residing in soil, although they are found in high abundance in many different terrestrial habitats (13, 22, 35, 36).”