PseAAC-Builder: a cross-platform stand-alone program for generating various special Chou's pseudo-amino acid compositions.

By Pufeng Du, Xin Wang, Chao Xu, Yang Gao. Analytical Biochemistry, 2012

294 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/d9b9f28630c21f1e6cef9a85948c038c9717d91d

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In Molecular Biology

1. Kuo-Chen Chou
2. Bin Liu
3. Xuan Xiao
4. Jianhua Jia
5. Hao Lin
6. Zi Liu
7. Bingxiang Liu
8. Longyun Fang

Citations in the corpus

• Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences (2015, background): “(i) It is so far the first web server that can generate all the existing pseudo components for DNA, RNA and protein sequences that might be acquired by separately trying many different web servers and stand-alone tools such as PseAAC (11), PseAAC-Builder (12), propy (13), PseAAC-General (4), PseKNC ”
• pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach. (2016, methodology): “Ever since the concept of pseudo amino acid composition or Chou’s PseAAC [37-39] was proposed, it has rapidly penetrated into many biomedicine and drug development areas [40] and nearly all the computational proteomics areas (see, e.g., [41-44; 45 ; 46-50] as well as a long list of references cited ”
• iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition (2013, methodology): “net) (24) was established for generating various special modes of PseAAC, in addition to the earlier web-server PseAAC (http://www.”
• iAMP-2L: a two-level multi-label classifier for identifying antimicrobial peptides and their functional types. (2013, methodology): “Because it has been widely used, in 2012 a powerful soft-ware called PseAAC-Builder [56] was established for generating various special Chou’s pseudo-amino acid compositions, in addition to the web-server PseAAC [57] built in 2008.”
• PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition. (2014, methodology): “Owing to its wide and increasing applications, recently three powerful software programs—PseAAC–Builder [21], propy [22], and PseAAC–General [23]—were established for generating various different modes of PseAAC in addition to the web server PseAAC [24] built in 2008.”
• iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition (2013, background): “net) [47] was established for generating various special modes of PseAAC for protein or peptide sequences.”