Theory for the folding and stability of globular proteins.

By Ken A. Dill. 1985

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A position-specific distance-dependent statistical potential for protein structure and functional study (2012, background): “…Zhang, 2010; Zhou and Zhou, 2002) compare favorably to physics-based potentials (Brooks et al., 2009; Bryngelson et al., 1995; Case et al., 2005; Dill, 1985, 1997; Dobson et al., 1998; Schuler et al., 2001; Shakhnovich, 2006) in many applications including ab initio folding (Jones and Thirup,…”
Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution (2021, background): “A particularly 464 popular model in this regard has been the highly simplified HP lattice model, where folds are represented as self-avoiding walks 465 on a lattice, and the full sequence is reduced to binary alphabet (H stands for hydrophobic and P for polar amino acids) [55].”
The power of coarse graining in biomolecular simulations (2013, background): “76 The motivation for such simple models was, as for most biological molecules, to address the issue of conformational sampling.”
A tutorial for competent memetic algorithms: model, taxonomy, and design issues (2005, methodology): “One well-studied example is Dill’s HP model [53].”
The protein folding problem. (2008, background): “Models arose in the 1980s to study the nature of the conformational space (19,47), i.”
Statistical potential for assessment and prediction of protein structures (2006, background): “Therefore, an accurate free energy function would enable the is to also prediction and assessment of protein structures (Dill 1985, 1997; Bryngelson et al. 1995; Dobson et al. 1998; Shakhnovich 2006).”