Icy: an open bioimage informatics platform for extended reproducible research
By F. Chaumont, Stéphane Dallongeville, Nicolas Chenouard, Nicolas Hervé, Sorin I. Pop, Thomas Provoost, Vannary Meas-Yedid, Praveen Pankajakshan, Timothee Lecomte, Y. L. Montagner and 3 more. Nature Methods, 2012
1,455 citations recorded by the source corpus.
Subfields: Biophysics, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/cf824c20f33208f7b81303f34f2901a0ff84f06b
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Biophysics
- Curtis T. Rueden
- Kevin W. Eliceiri
- Johannes E. Schindelin
- Mark C. Hiner
- Alison E. Walter
- Barry E. DeZonia
- Ellen T. Arena
- Michael A. Unser
In Molecular Biology
- Curtis T. Rueden
- Johannes E. Schindelin
- Kevin W. Eliceiri
- Mark C. Hiner
- Alison E. Walter
- Barry E. DeZonia
- Ellen T. Arena
Citations in the corpus
- ImageJ2: ImageJ for the next generation of scientific image data (2017, methodology): “This need and ability for method sharing has resulted in a plethora of opensource solutions in bioimage informatics, ranging from image acquisition tools such asμManager [7, 8]; databases such as Bio-Image Semantic Query User Environment (BisQue) [9] and OME Remote Objects (OMERO) [10]; image analys”
- DeconvolutionLab2: An open-source software for deconvolution microscopy. (2017, methodology): “DeconvolutionLab2 is delivered as a plugin for ImageJ [20], for Fiji [21], and for the new bio-imaging platform Icy [22].”
- The ImageJ ecosystem: an open platform for biomedical image analysis (2015, methodology): “They range from very general-purpose tool kits!!such as R (http://rproject.org/), VisAD (Hibbard, 1998), and MATLAB!!to more domain-specific packages!!such as Icy (de Chaumont et al., 2012), Vaa3D (Long et al., 2012), and Endrov (Henriksson et al., 2013) in the field of biomedial-image informatics.”
- P-Body Purification Reveals the Condensation of Repressed mRNA Regulons. (2017, neutral): “…from Didier Poncet (Vitour et al., 2004) N/A Software and Algorithms ImageJ, Fiji, version 2.0.0-rc-49/1.51e Open source image processing software https://fiji.sc/ Icy Open community platform for bioimage informatics (de Chaumont et al., 2012) http://icy.bioimageanalysis.org/ Scaffold, version4.”