The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis.

By J. Shaw, Edgar B. Lickey, J. Beck, S. Farmer, Wusheng Liu, Jermey Miller, K. C. Siripun, C. Winder, E. Schilling, R. Small. American-Eurasian journal of botany, 2005

1,907 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/cccd200d498d1d9cc34264233ca5f660f8221c90

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In Ecology, Evolution, Behavior and Systematics

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Citations in the corpus

Late Neogene history of the laurel tree (Laurus L., Lauraceae) based on phylogeographical analyses of Mediterranean and Macaronesian populations (2009, positive): “…2001), and in other tree species of the Lauraceae (Wu et al., 2006) and other families (e.g. Olea europaea, Besnard et al., 2007; Quercus suber, Magri et al., 2007; Pinus pinea, Vendramin et al., 2008; see also Shaw et al., 2005, for lineage comparison of these cpDNA regions across Spermatophyta).”
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. (2007, methodology): “…normalized PIC value found within each region and shows that nine regions, namely rpl32-trnL(UAG), trnQ(UUG)-5 0rps16, 30trnV(UAC)-ndhC, ndhF-rpl32, psbD-trnT(GGU), psbJ-petA, 30rps16-50trnK(UUU), atpI-atpH, and petL-psbE, are likely to offer more PICs than the best regions of Shaw et al. (2005).”
Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding (2012, background): “Most of the loci identified in this study have been used frequently for phylogenetic reconstructions, and their evolutionary features have been discussed [24,26,27].”
Phylogeography of Quercus aquifolioides provides novel insights into the Neogene history of a major global hotspot of plant diversity in south‐west China (2017, positive): “Five hundred and ninety individuals were sequenced at four cpDNA loci [trnH-psbA, rpS16, trnS (GCU) – trnT (GGU) and trnQ (UUG) – trnS (GGU); Kanno et al., 2004; Shaw et al., 2005] after initial tests with 16 loci.”
Phylogenetic relationships and distribution of New World Melastomeae (Melastomataceae) (2013, methodology): “The psbK-psbL spacer was amplified using primers designed by Kim-Joong Kim (Korea University, South Korea) and published by Reginato, Michelangeli & Goldenberg (2010), and the accD-psaI spacer was amplified using primers designed by Shaw et al. (2005).”