PDBsum new things

By Roman A. Laskowski. Nucleic Acids Res., 2008

608 citations recorded by the source corpus.

PDBsum (http://www.ebi.ac.uk/pdbsum) provides summary information about each experimentally determined structural model in the Protein Data Bank (PDB). Here we describe some of its most recent features, including figures from the structure's key reference, citation data, Pfam domain diagrams, topology diagrams and protein–protein interactions. Furthermore, it now accepts users’ own PDB format files and generates a private set of analyses for each uploaded structure.

Subfields: Materials Chemistry, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/c851dc7307c4e5c88a791662e114e3dadc7d0f67

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Daniel W. A. Buchan
2. David T. Jones
3. S. Velankar
4. Timothy Nugent
5. Gerard J. Kleywegt
6. Ingvar C. Lagerstedt
7. Wim F. Vranken
8. Swanand P. Gore

In Molecular Biology

1. David T. Jones
2. Daniel W. A. Buchan
3. Kevin Bryson
4. Timothy Nugent
5. S. Velankar
6. Federico Minneci
7. Gerard J. Kleywegt
8. Ingvar C. Lagerstedt

Citations in the corpus

• Scalable web services for the PSIPRED Protein Analysis Workbench (2013, background): “Clicking the thumbnail picture takes the user to PDBSum (23), where a detailed summary of each PDB chain can be found.”
• PDBe: Protein Data Bank in Europe (2010, background): “The results pages provide hyperlinks to related bioinformatics resources such as PDBeMotif, OCA, GeneCensus (41), FSSP (42), 3Dee (43), PDBsum ( 44 ), UniProt (9) and ProtoMap (45).”
• The Legionella pneumophila kai operon is implicated in stress response and confers fitness in competitive environments (2013, unknown): “2r3pre, Schrödinger, LLC) and PDBsum software (Laskowski, 2009) were used to generate this figure.”