Sequence variation of non-coding regions of chloroplast DNA of soybean and related wild species and its implications for the evolution of different chloroplast haplotypes

By D. Xu, J. Abe, M. Sakai, A. Kanazawa, Y. Shimamoto. Theoretical and Applied Genetics, 2000

94 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/c73af31198215596f2d75c03489fb4a4dd207b55

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In Molecular Biology

1. Thomas Borsch
2. D. Quandt
3. H. Freitag
4. R. Small
5. M. Blanco
6. Mark W. Chase
7. Lorena Endara
8. John C. Cushman

In Plant Science

1. K. Weising
2. G. Edwards
3. H. Akhani
4. Eric H. Roalson
5. H. Freitag
6. Thomas Borsch
7. P. Schütze
8. D. Quandt

Citations in the corpus

• Diversification of the Old World Salsoleae s.l. (Chenopodiaceae): Molecular Phylogenetic Analysis of Nuclear and Chloroplast Data Sets and a Revised Classification (2007, methodology): “The chloroplast psbB-psbH spacer region was amplified using the primers psbB-psbH-f (59-AGA TGT TTT TGC TGG TAT TGA-39) and psbB-psbH-r (59-TTC AAC AGT TTG TGT AGC CA-39; Xu et al. 2000).”
• Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA (2009, background): “Thus, the first sets of primers by Hamilton (1999) and Xu et al. (2000) were located in trnS and the trnG 50 exon.”
• Generic recircumscriptions of Oncidiinae (Orchidaceae: Cymbidieae) based on maximum likelihood analysis of combined DNA datasets (2012, background): “…was amplified with the parameters 94 °C for 3 min; 33 ¥ (94 °C for 1 min; 58 °C for 1 min; 72 °C for 1 min 20 s); 72 °C for 6 min, with the primers F and R sensu Xu et al. (2000). ycf1: We sequenced two noncontiguous portions of ycf1 (Neubig et al., 2009) including approximately 1200 bp from the…”
• The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. (2005, background): “Xu et al. (2000) showed this region to be less informative than trnH-psbA, trnS-trnG, and trnT-trnL, but more informative than atpB-rbcL and ndhD-ndhE.”
• An integrated molecular and morphological study of the subfamily Suaedoideae Ulbr. (Chenopodiaceae) (2003, background): “DNA regions (atpB-rbcL; Manen et al. 1994 and psbB-psbH; Xu et al. 2000 ) from 41 recognized species of Suaedeae and from Bienertia, beside of 15 infraspecific or unknown taxa.”