Mesquite: a modular system for evolutionary analysis. Version 2.01 (Build j28)

By Wayne P. Maddison, D. Maddison. 2007

474 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/c49793fc81482334c62190728a8b54e56825842c

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Citations in the corpus

Patterns of Body and Tail Length and Body Mass in Sciuridae (2008, unknown): “For continuous bivariate comparisons (body mass versus head–body length and tail length versus head–body length), PIC were performed with Mesquite (Maddison and Maddison 2007) and PDAP (Milford et al. 2003) using the generic phylogeny in Mercer and Roth (2003) supplemented by species information fro”
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees (2012, methodology): “…that considers ILS has been proposed: minimization of the number of extra gene lineages on a species branch due to Deep Coalescence (MDC) has been used as a criterion for tree inference (Maddison, 1997; Maddison and Knowles, 2006; Maddison and Maddison, 2011; Page, 1998; Than and Nakhleh, 2009).”
Estimating a binary character's effect on speciation and extinction. (2007, methodology): “Alternatively, we could weight these root states by the equilibrium frequencies of 0 and 1 implicit in the model (see Appendix 2), as done by default in Mesquite version 1.1 and later for similar likelihood calculations for ancestral states (Maddison and Maddison, 2006).”
Phylogenetic Methods in Biogeography (2011, methodology): “The past years have witnessed an increasing interest in using CTMC island models, combined with either ML or BI inference (Maddison & Maddison 2007, Pagel 1999, Pagel et al. 2004), to estimate the rate of dispersal between areas or the degree of dispersal asymmetry within singleorganism groups…”