Estimating a binary character's effect on speciation and extinction.

By Wayne P. Maddison, Peter E. Midford, Sarah P. Otto. Systematic Biology, 2007

1,122 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology, Paleontology

View Paper: https://www.semanticscholar.org/paper/36c7f7544027823dd99e13661975d4c6334c0650

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

1. I. Sanmartín
2. N. Matzke
3. Richard H. Ree
4. Stephen A. Smith
5. D. Rabosky
6. Fredrik Ronquist
7. Isabel Sanmart
8. S. Sánchez-Ramírez

In Molecular Biology

1. I. Sanmartín
2. Richard H. Ree
3. Isabel Sanmart
4. Stephen A. Smith
5. Fredrik Ronquist
6. D. Rabosky
7. Richard G. FitzJohn
8. S. Sánchez-Ramírez

In Paleontology

1. I. Sanmartín
2. N. Matzke
3. D. Rabosky
4. Richard H. Ree
5. Stephen A. Smith
6. Fredrik Ronquist
7. Isabel Sanmart
8. M. Rodríguez

Citations in the corpus

• The role of frugivory in the diversification of bats in the Neotropics (2012, methodology): “antagonism or mutualism) across the time-calibrated phylogenetic tree with the binary state speciation and extinction model (BiSSE; Maddison et al., 2007) corrected for incomplete phylogenies (FitzJohn et al.”
• Prospects and challenges for parametric models in historical biogeographical inference (2009, methodology): “As with the DEC and Bayesian island models, inspiration is found in phylogenetic methods for inferring character evolution, specifically in the binary state speciation–extinction model (BiSSE) introduced by Maddison et al. (2007). This model describes the simultaneous evolution of a discrete binary ”
• Phylogenetic Methods in Biogeography (2011, methodology): “The result is GeoSSE (geological state speciation and extinction), a model inspired by the binary state speciation extinction model (FitzJohn et al. 2009, Maddison et al. 2007).”
• Climatic niche conservatism and the evolutionary dynamics in species range boundaries: global congruence across mammals and amphibians (2011, methodology): “Ideally, we would also have liked to estimate the effect of our binary character (escapee versus non-escapee) on diversification using a maximum likelihood-based model such as BiSSE (binary-state speciation and extinction, Maddison et al., 2007).”
• Palaeotropical origins, boreotropical distribution and increased rates of diversification in a clade of edible ectomycorrhizal mushrooms (Amanita section Caesareae) (2015, methodology): “For this purpose, we used the binary-state speciation and extinction (BiSSE) model (Maddison et al., 2007; FitzJohn et al., 2009) implemented in diversitree (FitzJohn, 2012), which integrates the likelihoods of speciation (k), extinction (l) and continuous-time state transition (q) into a single fun”
• Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees (2014, methodology): “This is consistent with previous studies that have noted low power in estimating 630 extinction rates from molecular phylogenies [23,52].”