Effectiveness of different classes of molecular marker for classifying and revealing variation in rice (Oryza sativa) germplasm

By P. Virk, J. Zhu, H. Newbury, G. Bryan, M. T. Jackson, Brian V. Ford-Lloyd. Euphytica, 2000

132 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/bc0d225b4a7db45c66041dba2ed8217206866243

How researchers see this paper

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In Genetics

1. H. Nybom
2. Tan. S.G.
3. Wei Lun Ng

In Plant Science

1. Jinguo Hu
2. B. Vick
3. H. Nybom
4. D. Mackill
5. B. Collard
6. Tan. S.G.
7. Wei Lun Ng
8. Milee Agarwal

Citations in the corpus

• Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants (2004, background): “…that enough primers and primer combinations are employed to ensure sufficient numbers of polymorphic bands and good genome coverage (Barker et al. 1999; Blair et al. 1999; Gagne et al. 2000; Virk et al. 2000; Garcia-Mas et al. 2001; Goulao & Oliveira 2001; Goulao et al. 2001; Uptmoor et al. 2003).”
• Target region amplification polymorphism: A novel marker technique for plant genotyping (2003, background): “Because TRAP uses longer primers than RAPDs, it should have better reproducibility.”
• Monitoring of cultivar identity in tissue culture-derived date palms using RAPD and AFLP analysis (2006, background): “The highly discriminative value and effectiveness of AFLP, compared with other PCR-based markers was previously reported in other crops including rice (Virk et al. 2000), barley (Russell et al. 1997) and potato (McGreger et al. 2000, Milbourne et al. 1997).”
• Molecular Marker based Genetic Diversity Analysis in Rice (Oryza sativa L.) using RAPD and SSR markers (2003, unknown): “The results of MMGDA in rice were used to establish pedigree relationship (Akagi et al., 1997), predict hybrid performance (Xiao et al., 1996; Liu and Wu, 1998; Zhao et al., 1999) and identify varieties (Olufowote et al., 1997; Bligh, 2000; Virk et al., 2000).”
• Genetic analysis of some Egyptian rice genotypes using RAPD, SSR and AFLP (2005, background): “Recently, the efficacies of different classes of PCRbased markers were also used to characterize barley and rice cultivars (Saker et al., 2005 and Virk et al., 2000).”
• Phylogenetic diversity and relationships among 40 rice accessions using morphological and RAPDs techniques (2005, background): “According to Virk et al. (2000) , the use of morphological characters in the classification of germplasm, particularly in rice, has been met with difficulties because the technique is inefficient.”
• Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding (2002, methodology): “To date, more polymorphism has been detected with the use of ISSRs than with any other assay procedure (Gupta et al., 1994; Salimath et al., 1995; Virk et al., 2000).”
• Assessment of genetic diversity within and among Basmati and non-Basmati rice varieties using AFLP, ISSR and SSR markers (2004, background): “Virk et al. (2000) reported differences between AFLP and ISSR marker techniques in terms of classification of 42 rice accessions belonging to varietal groups I, II and VI.”
• Nonanchored Inter Simple Sequence Repeat (ISSR) markers: Reproducible and specific tools for genome fingerprinting (2001, background): “Variation in primer concentration is one of the main sources of RAPD pattern variations (Hansen et al., 1998; Virk et al., 2000).”