Target region amplification polymorphism: A novel marker technique for plant genotyping

By Jinguo Hu, B. Vick. Plant Molecular Biology Reporter, 2003

310 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/835bf16a89db8cef9996f589bec4cb76f0df3766

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. D. Mackill
2. B. Collard
3. A. Singh
4. B. Singh
5. J. Faris
6. Milee Agarwal
7. H. Padh
8. Neeta Shrivastava

In Plant Science

1. D. Mackill
2. B. Collard
3. A. Singh
4. B. Singh
5. Milee Agarwal
6. H. Padh
7. Neeta Shrivastava
8. J. Faris

Citations in the corpus

• Markers associated with a QTL for grain yield in wheat under drought (2007, methodology): “For STS markers that did not amplify a product, target region amplification polymorphism (TRAP) marker sequences were used as arbitrary sequences together with the targeted EST-based STS sequence (Hu and Vick 2003).”
• Marker-Assisted Plant Breeding: Principles and Practices (2015, background): “These markers seem to be reproducible, and an automatic DNA sequencer in conjunction with fluorescent labels can be used for their detection (Hu and Vick 2003).”
• High-density Linkage Map of Cultivated Allotetraploid Cotton Based on SSR, TRAP, SRAP and AFLP Markers (2007, methodology): “Another new marker system, target region amplification polymorphism (TRAP) is also polymerase chain reaction (PCR)-based (Hu and Vick 2003) to detect EST-linked polymorphic markers, in which a fixed primer designed based”
• Conserved DNA-Derived Polymorphism (CDDP): A Simple and Novel Method for Generating DNA Markers in Plants (2009, methodology): “morphism (Hu and Vick 2003), and SCoT polymorphism (Collard and Mackill 2009) and CoRAP (Wang et al.”
• Target Region Amplification Polymorphism (TRAP) for Assessing Genetic Diversity in Sugarcane Germplasm Collections (2006, methodology): “A fixed primer of about 18 nucleotides is designed from EST sequences or genes of interest and an arbitrary primer of about the same length is designed with either an AT- or GC-rich motif to anneal with an intron or exon, respectively (Hu and Vick, 2003; Li and Quiros, 2001).”
• Start Codon Targeted (SCoT) Polymorphism: A Simple, Novel DNA Marker Technique for Generating Gene-Targeted Markers in Plants (2009, methodology): “The optimal primer length in the TRAP technique was also found to be 18 nucleotides (Hu and Vick 2003).”
• Saturation and comparative mapping of a major Fusarium head blight resistance QTL in tetraploid wheat (2007, methodology): “This might result from the use of a low annealing temperature in the TRAP PCR ( Hu and Vick 2003 ).”
• Whole genome mapping in a wheat doubled haploid population using SSRs and TRAPs and the identification of QTL for agronomic traits (2008, methodology): “TRAP marker analysis was conducted as described by Hu and Vick (2003).”
• Advances in molecular marker techniques and their applications in plant sciences (2008, methodology): “The TRAP technique (Hu and Vick 2003) is a rapid and efficient PCR-based technique, which utilizes bioinformatics tools and expressed sequence tag (EST) database information to generate polymorphic markers, around targeted candidate gene sequences.”
• Application of the TRAP technique to lettuce (Lactuca sativa L.) genotyping (2005, methodology): “The newly developed TRAP (Target Region Amplified Polymorphism) technique (Hu and Vick, 2003) takes advantage of the existence of the public EST databases and uses the sequences to design PCR primers against annotated EST sequences to detect polymorphic markers in order to link the EST sequences…”