GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes

By David Posada, Keith A. Crandall, Alan R. Templeton. Molecular Ecology, 2000

1,216 citations recorded by the source corpus.

Subfields: Ecological Modeling, Genetics

View Paper: https://www.semanticscholar.org/paper/b9d3f2cf26f268c61bc02103fbf43b37d2a1271a

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecological Modeling

In Genetics

Citations in the corpus

Timing of the population dynamics of bullhead Cottus gobio (Teleostei: Cottidae) during the Pleistocene (2002, methodology): “The program GEODIS vs. 2.0 (Posada et al., 2000) was used for implementing the calculations of the distance measures and their statistical significance.”
Beyond FST: Analysis of population genetic data for conservation (2004, methodology): “MSVAR Microsatellites http://sapc34.rdg.ac.uk/� mab/ Beaumont (1999) GEODIS Sequences; AFLPs http://inbio.byu.edu/Faculty/ kac/crandall_lab/computer.html Posada et al. (2000) 1”
High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past? (2004, background): “A total of 93 clades containing both geographic and genetic information were entered into GeoDis version 2.0 ( Posada et al. 2000 ).”
Evolution and phylogeography of the tubenose goby genus Proterorhinus (Gobiidae: Teleostei): evidence for new cryptic species (2009, methodology): “GEODIS, version 2.5 ( Posada, Crandall & Templeton, 2000 ) tested for a significant association of haplotypes and geography, and the inference key of Templeton (2004; updated by D. Posada, 2005) was used to identify the likely cause(s) of association for significant clades.”
Genetic structure of natural populations of California red abalone (Haliotis rufescens) using multiple genetic markers (2007, methodology): “Nested clade analysis (NCA) was performed on each cladistic level in order to Wnd geographic structure among the haplotypes using the program GeoDis 2.2 ( Posada et al. 2000 ).”
Contrasting phylogeographical patterns for springtails reflect different evolutionary histories between the Antarctic Peninsula and continental Antarctica (2009, methodology): “5 (Posada et al., 2000) to obtain a measure of how any one particular clade was distributed geographically compared to its closest evolutionary sister clades.”
Molecular and palaeoecological evidence for multiple glacial refugia for evergreen oaks on the Iberian Peninsula (2007, methodology): “4 (Posada et al., 2000): (1) the ‘clade distance’ (Dc), which measures the geographical spread of chlorotypes within a given clade, and (2) the ‘nested clade distance’ (Dn), which indicates how far apart chlorotypes within a clade are from the chlorotypes of the evolutionarily closest sister clades.”
Phylogeography of the widespread marine invader Microcosmus squamiger (Ascidiacea) reveals high genetic diversity of introduced populations and non‐independent colonizations (2008, methodology): “5 (Posada et al., 2000), to analyse the relationship between genetic and geographical patterns.”
Implications of life history for genetic structure and migration rates of southern African coastal invertebrates: planktonic, abbreviated and direct development (2007, methodology): “5 (Posada et al. 2000) was used to identify signiWcant associations between nested clades and geography, using a categorical permutation contingency analysis (100,000 permutations).”
Tracing the origin of US brown marmorated stink bugs, Halyomorpha halys (2013, methodology): “Associations between haplotypes and geography were tested with GeoDis (Posada et al. 2000).”
Population genetic analysis of Arapaima gigas, one of the largest freshwater fishes of the Amazon basin: implications for its conservation (2005, methodology): “used the program GeoDis version 2.0 ( Posada, Crandall & Templeton, 2000 ) to test for geographical association of clades and nested clades using a permutation contingency analysis (Templeton & Sing, 1993).”
Mitochondrial differentiation and biogeography of Hyla meridionalis (Anura: Hylidae): an unusual phylogeographical pattern (2007, methodology): “These tests were performed with the GeoDis 2.2 software package (Posada et al., 2000, 1,000,000 permutations), and the evolutionary patterns were sorted out following the inference key (updated 11 November 2005) provided by these authors with GeoDis 2.2.”
Incongruent patterns of genetic connectivity among four ophiuroid species with differing coral host specificity on North Atlantic seamounts (2010, methodology): “2 (Automated Nested Clade Analysis) (Panchal 2006; Panchal and Beaumont 2007) which uses GeoDis 2.5 (Posada et al. 2000) and automates the inference process.”