Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences.

By P. Cuenoud, V. Savolainen, L. Chatrou, M. Powell, R. Grayer, Mark W. Chase. American-Eurasian journal of botany, 2002

616 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/b6ae51695cdd2ea493ea2ebc04b2a6afffbe4d90

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Citations in the corpus

‘Andean‐centred’ genera in the short‐branch clade of Annonaceae: testing biogeographical hypotheses using phylogeny reconstruction and molecular dating (2006, methodology): “Partial matK sequences were amplified using primers 390F and 1326R (Cuénoud et al., 2002), and MintF and MintR (Pirie et al., 2005), in combination 390F/1326R or 390F/ MintR and MintF/1326R and sequenced using primers 390F and 1326R.”
Plant DNA barcoding: from gene to genome (2015, methodology): “(2008) used specific primers (Cuénoud et al., 2002) to amplify the matK gene of 1667 angiosperm plant samples and achieved a success rate of 100%.”
Diversification of the Old World Salsoleae s.l. (Chenopodiaceae): Molecular Phylogenetic Analysis of Nuclear and Chloroplast Data Sets and a Revised Classification (2007, background): “…relationships with other families have been explored by a number of researchers using morphological and molecular markers (Scott 1977a, 1977b, 1978; Cuénoud et al. 2002; Kadereit et al. 2003, 2006; Pratt 2003; Schütze et al. 2003; Müller and Borsch 2005; Shepherd et al. 2005; Kapralov et al.…”
Phylogeny of Amaranthaceae and Chenopodiaceae and the Evolution of C4 Photosynthesis (2003, methodology): “Molecular data, including our dense sampling of rbcL, however, so far are inconsistent as to the exact relationships of both families (Cuénoud et al. 2002; this study).”
The distribution of ester-linked ferulic acid in the cell walls of angiosperms (2010, background): “The Caryophyllales comprises *10,000 species and has been recognized as a natural assemblage since the nineteenth century (Cuénoud et al. 2002).”
Choosing and Using a Plant DNA Barcode (2011, background): “Use of a secondary primer pair (390F/ 1326R; [13]) can increase amplification and sequencing success by another ca.”
An update of the angiosperm phylogeny group classification for the orders and families of flowering plants : APGII (2003, background): “Limeaceae and Lophiocarpaceae are segregates necessitated by recent phylogenetic findings (Cuénoud et al., 2002).”
The endemic and non-endemic vascular flora of Madagascar updated (2013, background): “(Convolvulaceae), the basal genus sister to the rest of the family (Stefanović et al. 2002) and formerly placed in a family on its own; Barbeuia Thouars, the sole genus of Barbeuiaceae, an isolated family within the order Caryophyllales (Cuénoud et al. 2002); Diegodendron Capuron (Bixaceae), sister ”
Evaluation of 10 plant barcodes in Bryophyta (Mosses) (2010, neutral): “…were: atpF & atpH (Kim, 2007, unpubl. data), ITS3 & ITS4 (White et al., 1990), matK-1f & 3r (Kim, 2007, unpubl. data), as well as 390F & 1326R (Cuénoud et al., 2002), psbA3’f (Sang et al., 1997) & trnH5’r (Tate & Simpson, 2003), psbK & psbI (Kim, 2007, unpubl. data), rbcL-a_f & a_r (Kress &…”