LIAN 3.0: detecting linkage disequilibrium in multilocus data

By B. Haubold, R. Hudson. Bioinform., 2000

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View Paper: https://www.semanticscholar.org/paper/b5da52013340dcff80e262c241d69bf91a7a7d99

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Citations in the corpus

Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. (2000, methodology): “The program LIAN, version 3 (Haubold and Hudson 2000), was used to compute the number of alleles shared (D) between all pairwise comparisons of complete 12-locus haplotypes and to measure the variance of this distance measure (V D ).”
Linkage disequilibrium and association studies in higher plants: Present status and future prospects (2005, background): “In this review, we have tried to summarize LD studies conducted in plants, with major emphasis on newer aspects including LD among multiple loci and among loci with multiple alleles, and the effects of selection (including hitchhiking and epistasis) and gene conversion on LD.”
Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction (2014, methodology): “…been applied to Pyrenophora teres [19] and Aphanomyces euteiches [12] and are routinely used in the analyses of clonal populations although they are not easily calculated given available software including multilocus , which is no longer supported, and LIAN , which only works for haploids [20,21].”
PHENOTYPIC VARIATION AND GENOTYPIC DIVERSITY IN A PLANKTONIC POPULATION OF THE TOXIGENIC MARINE DINOFLAGELLATE ALEXANDRIUM TAMARENSE (DINOPHYCEAE) 1 (2010, methodology): “…loci to detect genetically differentiated individuals, gene diversity for each microsatellite and AFLP locus was estimated using the program LIAN (Haubold and Hudson 2000) after the formula for Ĥ (Nei 1987) through the Web interface of Version 3.5…”
Symbiodinium sp. associations in the gorgonian Pseudopterogorgia elisabethae in the Bahamas: high levels of genetic variability and population structure in symbiotic dinoflagellates (2003, methodology): “1 (Haubold and Hudson 2000) was used to calculate the number of alleles shared (D) between all pairwise comparisons of genotypes and to measure the variance of this distance measurement (VD).”