FUSARIUM-ID v. 1.0: A DNA Sequence Database for Identifying Fusarium

By David M. Geiser, María del Mar Jiménez-Gasco, Seogchan Kang, I. Makałowska, N. Veeraraghavan, Todd J. Ward, Ning Zhang, G. Kuldau, Kerry O'Donnell. European journal of plant pathology, 2004

1,010 citations recorded by the source corpus.

Subfields: Cell Biology, Plant Science

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Citations in the corpus

One stop shop: backbones trees for important phytopathogenic genera: I (2014) (2014, methodology): “The recommended and most frequently used gene for identification of species of Fusarium is the translation elongation factor 1α gene (TEF) and this is generally used for routine identifications, effectively performing a DNA barcoding function, and forms a significant component of the FUSARIUMID data”
Diversity and evolution of Fusarium species in the Gibberella fujikuroi complex (2009, neutral): “Instead, the gene encoding the translation elongation factor 1-alpha (TEF) has become the marker of choice as it is a single-copy gene that is highly informative among closely related species (Geiser et al ., 2004).”
The first 100 Trichoderma species characterized by molecular data (2006, methodology): “(FUSARIUM-ID version 1.0; Geiser et al. 2004) are available, they only use sequences from a single locus, and they do not contain additional tools enabling the user to retrieve the respective sequences for subsequent phylogenetic analysis.”
Colletotrichum – current status and future directions (2012, background): “…for diagnostic purposes in the Fungi , especially beta-tubulin (TUB2) and calmodulin ( e.g. for Aspergillus and Penicillium ; Samson et al. 2007, Peterson 2008, Houbraken et al. 2011), TEF1 (for Fusarium ; Geiser et al. 2004, O’Donnell et al. 2009) and COX1 (for Penicillium ; Seifert et al. 2007).”
Fusarium species associated with plants in Australia (2010, background): “This highly informative phylogenetic marker at the species level in Fusarium currently is the “marker of choice” for singlelocus identification in Fusarium (Geiser et al. 2004).”
Diversity and potential antifungal properties of fungi associated with a Mediterranean sponge (2010, background): “Aspergillus sydowii is a pathogen of soft coral in the Caribbean ( Geiser et al. 1998 ), yet was isolated from a sponge that was apparently healthy (Ein-Gil et al. 2009), as were the fungi isolated in this study.”
Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification (2008, background): “While the use of these new regions for purposes of species identifi cation is certain to complement—perhaps even replace—that of the ITS region in some groups of fungi (Geiser et al. 2004), the diffi culty associated with their generic primer design and”
Genetic variation among Fusarium isolates from onion, and resistance to Fusarium basal rot in related Allium species (2008, methodology): “Subsequently, the bootstrap value for a certain node in the original tree is calculated as the percentage of trees from the resampled data sets that show that particular node ( Felsenstein 1985 ).”
Fusarium head blight of wheat: pathogenic species and their mycotoxins (2010, methodology): “This approach was utilised by Geiser et al. (2004) to design a tool for rapid identification of isolates (http://isolate.”
Fusarium pathogenomics. (2013, methodology): “Owing to their importance to agriculture and medicine, dedicated web-accessible databases have been developed for their identification using portions of phylogenetically informative genes to conduct BLAST queries (29, 57, 59).”
Characterization of fungi (Fusarium and Rhizoctonia) and oomycetes (Phytophthora and Pythium) associated with apple orchards in South Africa (2011, methodology): “Sequences from Fusarium isolates were submitted to BLAST analyses in the FUSARIUM-ID v. 1.0 database (http://fusarium.cbio.psu.edu) (Geiser et al. 2004).”
Impact of DNA sequence-data on the taxonomy of anamorphic fungi (2007, background): “elongation factor 1-alpha (EF-1α) sequences (Geiser et al., 2004) to identify fungi to the species level.”
Fusarium oxysporum as Causal Agent of Tomato Wilt and Fruit Rot (2012, methodology): “To identify representative strains, polymerase chain reaction (PCR) was preformed with the primer pair: EF1 (5́ ATGGGTAAGGA(A/G)GACAAGAC-3́ ) and EF2 (5́ GGA(G/A)GTACCAGT(G/C)ATCATGTT -3́ ) (Geiser et al., 2004).”