One stop shop: backbones trees for important phytopathogenic genera: I (2014)

By K. Hyde, R. H. Nilsson, S. A. Alias, H. Ariyawansa, Jaime E. Blair, L. Cai, A. D. Cock, Asha J. Dissanayake, S. Glockling, Ishani D. Goonasekara and 30 more. Fungal diversity, 2014

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Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry. They are also part of the natural ecosystem and may play a role in regulating plant numbers/density. Morphological identification and analysis of plant pathogenic fungi, while important, is often hampered by the scarcity of discriminatory taxonomic characters and the endophytic or inconspicuous nature of these fungi. Molecular (DNA sequence) data for plant pathogenic fungi have emerged as key information for diagnostic and classification studies, although hampered in part by non-standard laboratory practices and analytical methods. To facilitate current and future research, this study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota, Basidiomycota, Mucormycotina (Fungi), and Oomycota, using recent molecular data, up-to-date names, and the latest taxonomic insights. Lineage-specific laboratory protocols together with advice on their application, as well as general observations, are also provided. We hope to maintain updated backbone trees of these fungal lineages over time and to publish them jointly as new data emerge. Researchers of plant pathogenic fungi not covered by the present study are invited to join this future effort. Bipolaris, Botryosphaeriaceae, Botryosphaeria, Botrytis, Choanephora, Colletotrichum, Curvularia, Diaporthe, Diplodia, Dothiorella, Fusarium, Gilbertella, Lasiodiplodia, Mucor, Neofusicoccum, Pestalotiopsis, Phyllosticta, Phytophthora, Puccinia, Pyrenophora, Pythium, Rhizopus, Stagonosporopsis, Ustilago and Verticillium are dealt with in this paper.

Subfields: Cell Biology, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/f3fd4376a8b7193484cf26ddd8886fba394fc231

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Citations in the corpus

Life styles of Colletotrichum species and implications for plant biosecurity (2017, background): “All rights reserved. crops worldwide (Agrios, 2004; Hyde et al., 2009, 2014; Cannon et al., 2012; Fig.”
Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species (2017, background): “The asexual morphs of Pleosporaceae have been reported as coelomycetous or hyphomycetous (Zhang et al. 2012; Hyde et al. 2013, 2014; Ariyawansa et al. 2015c).”
Fungal diversity notes 709–839: taxonomic and phylogenetic contributions to fungal taxa with an emphasis on fungi on Rosaceae (2018, background): “Gomes et al. (2013) provided detailed descriptions of 54 species of Diaporthe and Hyde et al. (2014) provided a backbone phylogenetic tree of 72 species linked with the types.”
The current status of species in Diaporthe (2017, methodology): “Gomes et al. (2013) provided detailed descriptions of 54 species of Diaporthe that were linked to the types, while Hyde et al. (2014) provided a backbone phylogenetic tree of 72 species, also derived from the types.”