Electronic Reprint Biological Crystallography Optimal Description of a Protein Structure in Terms of Multiple Groups Undergoing Tls Motion Biological Crystallography Optimal Description of a Protein…

By J. Painter, E. Merritt. 2005

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Citations in the corpus

Towards automated crystallographic structure refinement with phenix.refine (2012, methodology): “A more rigorous and automated approach is implemented in the TLSMD algorithm (Painter & Merritt, 2006a,b).”
Daedalus: a robust, turnkey platform for rapid production of decigram quantities of active recombinant proteins in human cell lines using novel lentiviral vectors (2011, unknown): “The structure was submitted to the TLSMD server (27,28) and TLS refinement using a single group was applied to the final model.”
PDB_REDO: constructive validation, more than just looking for errors (2012, methodology): “Multiple TLS models are tested whenever possible: a simple model with one TLS group per chain, the TLS model extracted from the PDB header and any additional user-provided TLS models (for instance, from TLSMD; Painter & Merritt, 2006).”
Crystal structure of the TLR4-MD-2 complex with bound endotoxin antagonist Eritoran. (2007, unknown): “The final models were further refined using the program REFMAC (Murshudov et al., 1997) with the TLS program parameters generated by the TLSMD server (Painter and Merritt, 2006).”
The Phenix Software for Automated Determination of Macromolecular Structures (2011, methodology): “TLS groups can be defined using the TLSMD web server[65], which analyses the current ADPs to find groupings of atoms with correlated displacements.”
From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation (2018, methodology): “Secondly, the implementation of TLS refinement in modern refinement packages does not allow control of the parameters of group motion by means of restraints or constraints (see a discussion in Painter & Merritt, 2006) because these parameters are refined indirectly.”
Structure of collagenase G reveals a chew and digest mechanism of bacterial collagenolysis (2011, unknown): “54 ) with the translation libration screw (TLS) description of the anisotropic rigid-body motio”
Crystal structures (2004, unknown): “More detailed choices can be made using methods such as TLSMD (Painter & Merritt, 2006).”
Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs (2010, methodology): “During refinement, structural adjustments were modeled using TLS motion determination (26).”