Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses

By W. Chen, Nicholas J. Provart, Jane Glazebrook, Fumiaki Katagiri, Hur-Song Chang, T. Eulgem, F. Mauch, S. Luan, Guangzhou Zou, S. Whitham and 15 more. The Plant Cell Online, 2002

1,027 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/a9b65a49259f29f6bc09fd68104269081809b06e

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Citations in the corpus

The WRKY70 Transcription Factor: A Node of Convergence for Jasmonate-Mediated and Salicylate-Mediated Signals in Plant Defense On-line version contains Web-only data. (2004, background): “…in plant defense, plant senescence, and response to various environmental stresses (Yang et al., 1999; Du and Chen, 2000; Robatzek and Somssich, 2001; Yu et al., 2001; Chen andChen, 2002; Chen et al., 2002) as well as in developmental processes (Tepperman et al., 2001; Johnson et al., 2002).”
Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. (2004, methodology): “As many TFs are themselves regulated at the level of transcription (Chen et al., 2002), knowing where and when TF genes are transcribed, and how such transcription is affected by internal or external cues can be valuable in elucidating the speci®c biological roles of the cognate proteins.”
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. (2005, methodology): “Clustering methods used to ﬁnd co-regulated genes may also not be sensitive enough to detect such transcription factors (Chen et al. , 2002).”
Na+ tolerance and Na+ transport in higher plants. (2003, methodology): “The response to high salinity requires the coordinated induction of transcription of many genes, thus requiring the activity of speci®c sets of transcription factors and their binding to speci®c sequences in the promoter regions of target genes (Chen et al., 2002; Xiong et al., 2002).”
Recognition and response in the plant immune system. (2003, background): “Several large-scale expression profiling studies revealed that a multitude of transcription factor genes are expressed in response to a wide variety of different defense–related stimuli (17, 38, 95, 102).”
Plant drought stress: effects, mechanisms and management (2011, positive): “…sensing of stress and the activation of defense and acclimation pathways is believed to involve reactive oxygen species, calcium, calcium-regulated proteins, mitogen-activated protein kinase cascades, and cross-talk between di ﬀ erent transcription factors (Kovtun et al., 2000; Chen et al., 2002).”
OsNAC52, a rice NAC transcription factor, potentially responds to ABA and confers drought tolerance in transgenic plants (2010, background): “…isolated, including rd (responsive to dehydration) (Yamaguchi-Shinozaki et al. 1992), cor (cold-responsive) (Hajela et al. 1990), and erd (early responsive to dehydration) (Thomashow 1998), as well as various protein kinases (Zhang and Klessig 2001) and transcription factors (Chen et al. 2002).”
F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress1[W][OA] (2007, background): “A systematic regulation of gene expression has been found to drive the developmental processes and stress responses in Arabidopsis (Chen et al., 2002), indicating that an overlap of genes occurs between the developmental processes and stress responses.”
The molecular analysis of leaf senescence--a genomics approach. (2002, methodology): “Chen et al. (2002) used Affymetrix GeneChips to analyse the expression of genes encoding different classes of transcription factor during a range of different stress treatments including different types of pathogen, cold, high salt and also during leaf development.”
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. (2007, background): “…combinations for their effects on global gene expression in Arabidopsis and other plant species by several research groups (Brown et al., 2005; Chen et al., 2002; Desikan et al., 2001; Fowler and Thomashow, 2002; Hirai et al., 2004; Kreps et al., 2002; Rossel et al., 2002; Seki et al., 2001,…”
Abiotic stress tolerance in rice for Asia: progress and the future (2004, background): “2003), and genes associated with hormone metabolism (Chen et al. 2002) particularly show this nonspecific response.”
The SHINE Clade of AP2 Domain Transcription Factors Activates Wax Biosynthesis, Alters Cuticle Properties, and Confers Drought Tolerance when Overexpressed in Arabidopsis w⃞ (2004, background): “As this water loss in shn continues beyond the time when stomata close (Yoshida et al., 2002), it is the increased cuticular water loss in shn that is revealed.”