Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment

By A. Loy, A. Lehner, Natuschka M. Lee, Justyna Adamczyk, Harald Meier, J. Ernst, K. Schleifer, Michael Wagner. Applied and Environmental Microbiology, 2002

702 citations recorded by the source corpus.

Subfields: Ecology, Health, Toxicology and Mutagenesis, Pollution

View Paper: https://www.semanticscholar.org/paper/a91e12ca1811e3f17691dccefa0aaada93fe228c

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Citations in the corpus

Sequences, the environment and fungi (2006, methodology): “16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order ‘‘Rhodocyclales’’.”
The microbiology of biological phosphorus removal in activated sludge systems. (2003, background): “These are for the future, but the application of community ¢ngerprinting methods like DNA microarrays to a wide range of di¡erent activated sludge systems with their ability to detect many genes simultaneously [231,232] may greatly increase the rate at which the information necessary for these appli”
Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis. (2012, background): “Community profiling Early efforts to describe ‘‘who’s there’’ have relied upon cataloging species as designated by conserved changes in their rDNA sequence, either via targeted sequencing of amplicons, microarray technologies (Phylochip [1]), or electrophoretic sizing techniques that are primarily r”
Structural and functional diversity of soil bacterial and fungal communities following woody plant encroachment in the southern Great Plains. (2010, methodology): “SNR was calculated as (mean signal intensity e mean background intensity)/standard deviation of the background (Wu et al., 2006), and spots with SNR values 2 were excluded from further analysis (Loy et al., 2002).”
DNA-based methods for monitoring invasive species: a review and prospectus (2007, background): “negative hybridization with reference organisms and false positive identification of non-targets (Loy et al. 2002).”
Distribution of phosphatase activity and various bacterial phyla in the rhizosphere of Hordeum vulgare L. depending on P availability (2015, background): “Target Probe name Probe sequence (50e30) References Most Bacteria EUB 338 I GCT GCC TCC CGT AGG AGT Amann et al. (1990) Planctomycetales EUB 338 II GCA GCC ACC CGT AGG TGT Daims et al. (1999) Verrucomicrobiales EUB 338 III GCT GCC ACC CGT AGG TGT Daims et al. (1999) None (control probe) NON EUB 338 ”
GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes (2007, methodology): “, 2004), monitor environmental processes (Loy et al., 2002; Taroncher-Oldenburg et al., 2003; Zhou, 2003; Bodrossy and Sessitsch, 2004; Rhee et al., 2004; Steward et al., 2004; Tiquia et al., 2004; Zhou et al., 2004; Wu et al., 2006a), and potentially apply to clinic diagnosis (Lesko et al.”
Resource Exchange in the Rhizosphere: Molecular Tools and the Microbial Perspective (2006, neutral): “Using similar approaches, but with probes diagnostic for microbial species and higher taxonomic groups, DNA arrays are being developed to study microbial diversity in complex environments including soil (Bodrossy & Sessitsch 2004, Loy et al. 2002, Sanguin et al. 2006, Small et al. 2001).”