Protein sidechain conformer prediction: a test of the energy function.
By R. Petrella, T. Lazaridis, M. Karplus. 1998
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
- Andrew Leaver-Fay
- David Baker
- Tanja Kortemme
- Jeffrey J. Gray
- Ron Jacak
- Brian Kuhlman
- Michael D. Tyka
- Sergey Lyskov
Citations in the corpus
- Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement (2013, methodology): “Variants of the rotamer recovery test have long been used to evaluate molecular structure energy functions (Petrella et al., 1998; Liang & Grishin, 2002), including extensive use to evaluate the Rosetta energy function (Kortemme et al.”
- The penultimate rotamer library (2000, background): “conformations that are, in part, spatially isosteric for the sulfur and sometimes the Ce.(51) If x2 is p, then rotating x1 by 160° and x2 by 2120° will return the sulfur atom to its original position.”
- Side‐chain modeling with an optimized scoring function (2002, background): “Even when rotamer libraries are used, the combinatorial nature of side-chain placement on a given protein backbone has been often cited as the main obstacle to the correct prediction of side-chain conformation (Lee and Subbiah 1991; Eisenmenger et al. 1993; Petrella et al. 1998).”