Large-scale genotyping of complex DNA

By G. Kennedy, H. Matsuzaki, Shoulian Dong, Wei-min Liu, Jing Huang, Guoying Liu, Xing Su, Manqiu Cao, Wenwei Chen, Jane Zhang and 10 more. Nature Biotechnology, 2003

603 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/a3442861b0b1e15f701547d05e382147bc87d2f9

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

Citations in the corpus

A genome-wide scalable SNP genotyping assay using microarray technology (2005, methodology): “This representational approach, used to detect changes in genomic copy number, has also been applied to genotyping of 10 4 –10 5 or more SNPs from a single sample preparatio”
How to track and assess genotyping errors in population genetics studies (2004, background): “…occurrence are standard practice in only some genetics research areas, including noninvasive sampling (see Paetkau 2003 for a review), ancient DNA analysis (Hofreiter et al. 2001; Yoder & Delefosse 2002) or the single nucleotide polymorphism (SNP) technology (Wang et al. 1998; Kennedy et al. 2003).”
The Diploid Genome Sequence of an Individual Human (2007, methodology): “com), according to the manufacturer’s instructions and as described previously [96].”
Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays (2008, methodology): “However, most SNP assays are inherently quantitative at one or both alleles, requiring a genotype calling algorithm to digitize the inherently analog information of a SNP assay [ 16 ].”
Estimation of individual admixture: Analytical and study design considerations (2005, neutral): “genotype 10,000 - 100,000 SNPs simultaneously ( Kennedy et al. 2003 ).”
Highly parallel SNP genotyping. (2003, background): “…have also published genotyping assays that are conceptually similar (Schouten et al. 2002; Hardenbol et al. 2003), and others have also achieved high multiplexing levels using direct hybridization-based methods, albeit without the flexibility to assay any SNPs of interest (Kennedy et al. 2003).”
A Fully Electronic Label-Free DNA Sensor Chip (2007, methodology): “implemented with photolithographic techniques, are able to test a whole genome, with densities of a million sites per square centimeter [1].”
The linkage disequilibrium and the selection of genetic markers for association studies in European populations (2007, methodology): “Mapping 10K Array Sets from Affymetrix GeneChip series were introduced in 2003, when a work about rapid genotyping of 14,548 SNPs in three different human populations was published (Kennedy et al. 2003).”
Structural variation in the human genome (2006, methodology): “The principle of ROMA is similar to that applied in the use of BAC arrays, but to increase the signal-to-noise ratio, the 'complexity' of the input DNA is reduced by a method called representation or whole-genome samplin”
SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing (2013, methodology): “This overcomes many of the limitations of previous methods [15,16,32].”
Complementing the Genome with an “Exposome”: The Outstanding Challenge of Environmental Exposure Measurement in Molecular Epidemiology (2005, background): “A more comprehensive coverage of the genome and the possibility to examine the interplay between single nucleotide polymorphisms are now feasible through the application of microarray technology (14).”