A genome-wide scalable SNP genotyping assay using microarray technology

By Kevin L. Gunderson, Frank Steemers, Grace Lee, L. G. Mendoza, M. Chee. Nature Genetics, 2005

645 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/3c11de25f11a1579dba1f46c6188dbf192cf2d1e

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

Citations in the corpus

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. (2007, methodology): “The assay combines specific hybridization of genomic DNA to arrayed probes with allele-specific primer extension and signal amplification, thus achieving a high signal-to-noise ratio in genotype calling (Gunderson et al. 2005).”
A genome-wide association study of global gene expression (2007, methodology): “Whole-genome genotyping was carried out according to manufacturers' instructions using the Sentrix Human-1 Genotyping BeadChi”
Novel Crohn Disease Locus Identified by Genome-Wide Association Maps to a Gene Desert on 5p13.1 and Modulates Expression of PTGER4 (2007, methodology): “To that end we exploited a database of genome-wide gene expression (Affymetrix HG-U133 Plus 2.0 chips; http:// www.affymetrix.com) measured in EBV-transformed lymphoblastoid cell lines from 378 individuals genotyped with the Illumina HumanHap300 Genotyping Beadchip (W. Cookson, unpublished data).”
High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications. (2009, methodology): “Ancestry informative markers (AIMs) available on the HumanHap550 BeadChip (Yang et al. 2005) were used to evaluate eligible subjects to determine ethnicity.”
Marker-Assisted Selection in Plant Breeding: From Publications to Practice (2008, background): “With recent advances in high-throughput genotyping systems (e.g., Gunderson et al., 2005; Syvänen, 2005; Bai et al., 2007), MABC is likely to become increasingly cost eff ective.”
QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data (2007, methodology): “An alternative to GeneChip is provided by Illumina’s BeadArray technology for high-throughput SNP genotyping, where allele-specific hybridization is coupled with primer extension (Infinium assay) (18).”